BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF04RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1639 0.0
>3x_Contig1668
Length = 13429
Score = 1639 bits (827), Expect = 0.0
Identities = 847/854 (99%)
Strand = Plus / Plus
Query: 48 tgctagcgagatttcgagctcttccaaatcgtaaacaacgtaagcactggttaggaaggc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8012 tgctagcgagatttcgagctcttccaaatcgtaaacaacgtaagcactggttaggaaggc 8071
Query: 108 atcacctaaagtaatttcgttatcagattgagggagtattcccaagacacattgggaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8072 atcacctaaagtaatttcgttatcagattgagggagtattcccaagacacattgggaaga 8131
Query: 168 actgctcgttgtaacaatgtaatcacttaagggggatatgatatggaagccaccaaagtc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 actgctcgttgtaacaatgtaatcacttaagggggatatgatatggaagccaccaaagtc 8191
Query: 228 gaagacaagatcataatcactgccagaatcacaatccacaaaatagtatcctgaactgga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8192 gaagacaagatcataatcactgccagaatcacaatccacaaaatagtatcctgaactgga 8251
Query: 288 agagtacgtagcactaacagaacttgcaatggcagcagctaaactacttgggaagtaaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8252 agagtacgtagcactaacagaacttgcaatggcagcagctaaactacttgggaagtaaca 8311
Query: 348 gaatgtggcaccagtgtctagcaatgcagggtacttagtctgtgtcacagtctcgttacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 gaatgtggcaccagtgtctagcaatgcagggtacttagtctgtgtcacagtctcgttacc 8371
Query: 408 ataactgctcgtcacaccgataccttgtagagtgatcgataatctaatctgttcagtgta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8372 ataactgctcgtcacaccgataccttgtagagtgatcgataatctaatctgttcagtgta 8431
Query: 468 gcctatgcttctgagagcgttgaccattggaacggtgtacaacgtacctgtatatttgct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8432 gcctatgcttctgagagcgttgaccattggaacggtgtacaacgtacctgtatatttgct 8491
Query: 528 gtgatcgacggcaccgaataagatagaaccagaatccgcatctaagtcattcaagaaaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8492 gtgatcgacggcaccgaataagatagaaccagaatccgcatctaagtcattcaagaaaac 8551
Query: 588 agaatatgcattcttttcgatgacgccgtttctttgcaacacgatagggaagttatcgta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8552 agaatatgcattcttttcgatgacgccgtttctttgcaacacgatagggaagttatcgta 8611
Query: 648 ttgatagcggttgtaggtgcttaactgaccggaataagtggattcagaacctgtcaatcc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8612 ttgatagcggttgtaggtgcttaactgaccggaataagtggattcagaacctgtcaatcc 8671
Query: 708 aatacctaagacaccgaattgngaatctgtgtagttcgagacagcaaagctgagccccgt 767
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 8672 aatacctaagacaccgaattgggaatctgtgtagttcgagacagcaaagctgagccccgt 8731
Query: 768 gacgttgacatcgtccaagtgaatttcatctacaccccaatcaccatcagcaatagtacc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8732 gacgttgacatcgtccaagtgaatttcatctacaccccaatcaccatcagcaaaggtacc 8791
Query: 828 atccgcgttagagatatagaatctagtgtcatttgattgcccagaagacgaccttgacgt 887
|||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 8792 atccgcgtaagagatatagaatctagtgtcatttgattgccaagaagacgactttgacgt 8851
Query: 888 gtcgaaagttccaa 901
||||||||| ||||
Sbjct: 8852 gtcgaaagtaccaa 8865
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4697
Number of Sequences: 1807
Number of extensions: 4697
Number of successful extensions: 23
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)