BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF05FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1277 0.0
>3x_Contig1531
Length = 8774
Score = 1277 bits (644), Expect = 0.0
Identities = 738/761 (96%), Gaps = 8/761 (1%)
Strand = Plus / Plus
Query: 87 tccaaactatccgacactgaaggatcacgtttgaattttgtcaatgctactacccatgaa 146
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1855 tccaagctatccgacactgaaggatcacgtttgaattttgtcaatgctactacccatgaa 1914
Query: 147 ctcactttgagggtgttctgtacctcatctatgttgaagt-ataggactcctcaagatgt 205
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1915 ctcactttgagggtgttctgtacctcatctatgttgaagtcataggactcctcaagatgt 1974
Query: 206 tgcttctgatcttttctagagaacgatgactctcgaccataagtaccgtcacttcctctt 265
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975 tgcttctgaaccgagctagagaacgatgactctcgaccataagtaccgtcacttcctctt 2034
Query: 266 cgcttagccaccttcatggatggcaattcggtatcattcatcctgggcaacaaatcctca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 cgcttagccaccttcatggatggcaattcggtatcattcatcctgggcaacaaatcctca 2094
Query: 326 tcaccaaagcacaattgcaaaagatctgaatccaaatcctggatattctcataaagagag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 tcaccaaagcacaattgcaaaagatctgaatccaaatcctggatattctcataaagagag 2154
Query: 386 tgtatctgctcattggtatcgacaacagcttggtagttgcttttcaatgccttcccaaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tgtatctgctcattggtatcgacaacagcttggtagttgcttttcaatgccttcccaaat 2214
Query: 446 tcctcacgaagtttaaccacatctctactcaattgaacagaaatgtccctcacttcggcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 tcctcacgaagtttaaccacatctctactcaattgaacagaaatgtccctcacttcggcc 2274
Query: 506 acagatttctctctaaatagactagcagacatatcagtataacaaacagacagttagctt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2275 acagatttctctctaaatagactagcagacatatcagtataacaaacagacagttagctt 2334
Query: 566 tcgttacttctattttcaacggataatacgtgtatgtgaacgtgaatgcgaatgcgtgta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 tcgttacttctattttcaacggataatacgtgtatgtgaacgtgaatgcgaatgcgtgta 2394
Query: 626 tctgcttccaagattcaacactttcgtcgtcattcaatgagttatcttaacanagctgtg 685
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2395 tctgcttccaagattcaacactttcgtcgtcattcaatgagttatcttaacaaagctgtg 2454
Query: 686 gtttctctttaccatccattgngtctcagactgaatatattgtgtacagctgaacaaagt 745
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 2455 gtttctctttaccatccattggttctcagactgaatatattgggtacagctgaacaaagt 2514
Query: 746 tcatgaaattg-aatttatcaaaaa--caaagtcttattagct-cctttgacag-ccaac 800
||||||||||| ||||||||||||| ||||||| | |||| |||||||||| | |||
Sbjct: 2515 tcatgaaattgaaatttatcaaaaaacaaaagtctattaagctccctttgacagtcgaac 2574
Query: 801 cggcgctctttgtttttttt-tga-gaattccacttttttt 839
|||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 2575 cggcgctctttgttttttttctgaggaattccacttttttt 2615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6890
Number of Sequences: 1807
Number of extensions: 6890
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)