BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF05RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig274 1497 0.0
>3x_Contig274
Length = 1685
Score = 1497 bits (755), Expect = 0.0
Identities = 805/815 (98%), Gaps = 5/815 (0%)
Strand = Plus / Minus
Query: 91 tctgtaaagtaatctcaattggaatggttaatgacttcacgtaaactgctagatcttcag 150
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 tctgtaaagta-tctcaattggaatggttaatgacttcacgtaaactgctagatcttcag 1608
Query: 151 gagactttttatagccatattgaatcgtaatgcgtgcccatttcaaagtgaatggcgcct 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 gagactttttatagccatattgaatcgtaatgcgtgcccatttcaaagtgaatggcgcct 1548
Query: 211 ttgtaacatccaaattaacactgaagtggaaggattcattaatacctacttcatttggaa 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 ttgtaacatccaaattaacactgaagtggaaggattcattaatacctacttcatttggaa 1488
Query: 271 tcgaggatattgagatgaaattttctctcaaccattttagctgcgaatcaacgtcatata 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 tcgaggatattgagatgaaattttctctcaaccattttagctgcgaatcaacgtcatata 1428
Query: 331 gatcatctggtgctaaactggtccagtaattctctttcaattcagtttcaacgttagtga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1427 gatcatctggtgctaaactggtccagtaattctctttcaattcagtttcaacgttagtga 1368
Query: 391 tccagctaacactacaataatttatgggactagaaagagaagagtttctcaaaaatactt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1367 tccagctaacactacaataatttatgggactagaaagagaagagtttctcaaaaatactt 1308
Query: 451 taaactcagtctccgtaccatctaaaagcattacacggttatccactaaggtggttgata 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1307 taaactcagtctccgtaccatctaaaagcattacacggttatccactaaggtggttgata 1248
Query: 511 agaaacacaatgtaggctgttgatcaataatggtgattgggacggaatacagggtacatc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 agaaacacaatgtaggctgttgatcaataatggtgattgggacggaatacagggtacatc 1188
Query: 571 tttcctgagtgttgaatttaccgggttgcttacaaattccccagaactttgaaggcaacc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 tttcctgagtgttgaatttaccgggttgcttacaaattccccagaactttgaaggcaacc 1128
Query: 631 ccagtacagaaactgaaagtccttttaactgatgcaaagttagggtggaccttacgaaag 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 ccagtacagaaactgaaagtccttttaactgatgcaaagttagggtggaccttacgaaag 1068
Query: 691 taactccaacgcaaaactgtttctttgaggaggctggtattgtacaagaagtcagatcaa 750
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1067 taactccaacgcaaaactgtttctttgaggaggctggtattgtacaagaggtcagatcaa 1008
Query: 751 gatctgctattttcatgaactgtgcatcatcctcagtaaagtttatggaatttatcctgg 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1007 gatctgctattttcatgaactgtgcatcatcctcagtaaagtttatggaatttatcct-g 949
Query: 811 acatcgaatttaaatgggttctgggaacgttattaccaatctgaacagtctcagcgaccc 870
|||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct: 948 acatcgaatttaaatgggtt-ttggaacgttattacc-atctgaacagtctcagcgacca 891
Query: 871 aaaagtaattttgaattctctgtttccgtttcttt 905
|||||||| ||||||||||||||||| |||||||
Sbjct: 890 aaaagtaa-tttgaattctctgtttcgttttcttt 857
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6711
Number of Sequences: 1807
Number of extensions: 6711
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)