BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF06FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1535 1443 0.0
>3x_Contig1535
Length = 11102
Score = 1443 bits (728), Expect = 0.0
Identities = 845/873 (96%), Gaps = 9/873 (1%)
Strand = Plus / Plus
Query: 87 taaaagatattcacttgtttactaaacagattgaggaaacggattctcggttggaatccc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9069 taaaagatattcacttgtttactaaacagattgaggaaacggattctcggttggaatccc 9128
Query: 147 ttacttctgaggttatcccgcagctcaaatacaatttgaacaaaagatccatcattttca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9129 ttacttctgaggttatcccgcagctcaaatacaatttgaacaaaagatccatcattttca 9188
Query: 207 agcacttgaaacaagagaccatggtgatgcaggaacaattatatcagttgaagaacgatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9189 agcacttgaaacaagagaccatggtgatgcaggaacaattatatcagttgaagaacgatt 9248
Query: 267 gtgagctaaagaagaaaaaccatgagctgataactaacaacttgaatttagagcattcta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9249 gtgagctaaagaagaaaaaccatgagctgataactaacaacttgaatttagagcattcta 9308
Query: 327 taaatatacaagaagtgataaatcaatggcagctgaaaatatctgataaaagacacatct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9309 taaatatacaagaagtgataaatcaatggcagctgaaaatatctgataaaagacacatct 9368
Query: 387 gggaacttgagttacaaaaattaaaacaaactaaacctgatccggctgtccttaaagaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9369 gggaacttgagttacaaaaattaaaacaaactaaacctgatccggctgtccttaaagaaa 9428
Query: 447 tcgaagagttaagcacagataaagcgatcatagagaatgatttaaaagatttgaaacgta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9429 tcgaagagttaagcacagataaagcgatcatagagaatgatttaaaagatttgaaacgta 9488
Query: 507 aaaaccatgaacaaattcaatcatatgagaatgaattaaaattacgattggaaaagttca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9489 aaaaccatgaacaaattcaatcatatgagaatgaattaaaattacgattggaaaagttca 9548
Query: 567 aagaagataaaaaggaaccgctgatagcatccatagaagaaaacaaaaaactaaagatta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9549 aagaagataaaaaggaaccgctgatagcatccatagaagaaaacaaaaaactaaagatta 9608
Query: 627 agataaatg-atctgaaggcaactcangaagcactacgagataaaattcgaaatagtgtt 685
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9609 agataaatgcatctgaaggcaactcaggaagcactacgagataaaattcgaaatagtgtt 9668
Query: 686 gatactgaactttccttnacagaaattattaaaaataaaagattggagcttacaacgtta 745
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 9669 gatactgaactttccttacaagaaattattaaaaataaaagattggagctacaaacgtta 9728
Query: 746 gaagcttcattgggagcc-gtagaggagaaacttaaccaacttcaattgagatat-aatc 803
||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9729 gaagcttcatt-ggagccggtagaggagaaacttaaccaacttcaattgagatataaatc 9787
Query: 804 agaggaagat-accctgatgaagttaaagccaaagct-aatttgcagaagcggaatacaa 861
|||| ||||| | ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 9788 agagaaagataaaactgatgaagttaaagccaaagctaaattagcagaagcggaatacaa 9847
Query: 862 taaaaa-tatgataggatggacccagagctatcgcaaagaggattcttng-aaacacaat 919
|||||| |||||||| ||||| | ||||| |||||||||| || || | | |||||||||
Sbjct: 9848 taaaaattatgatagaatggaacaagagcaatcgcaaagaagaatcctggaaaacacaat 9907
Query: 920 agatgagttggat-gtcacattcgttgttttgc 951
||||||||||||| |||||||||||||||||||
Sbjct: 9908 agatgagttggatggtcacattcgttgttttgc 9940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8852
Number of Sequences: 1807
Number of extensions: 8852
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)