BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZF06RM1.SCF screened BAC_end
         (954 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1771                                                        1396   0.0  
3x_Contig812                                                          113   7e-25

>3x_Contig1771 
          Length = 25932

 Score = 1396 bits (704), Expect = 0.0
 Identities = 780/800 (97%), Gaps = 4/800 (0%)
 Strand = Plus / Plus

                                                                       
Query: 132 gccccagaatctgacttcacttgttcgaattccaaggttttaccatcatatttgaggaga 191
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 5   gccccagaatctgacttcacttgttcgaattccaaggtttacccatcatatttgaggaga 64

                                                                       
Query: 192 tcggcatttgcatcgaatgagctgatatttaaagtttgacataaatcaactttagaagag 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tcggcatttgcatcgaatgagctgatatttaaagtttgacataaatcaactttagaagag 124

                                                                       
Query: 252 tctccaccgctaatagctttttcaaaattctccttctgtatgactttatcacagattgct 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tctccaccgctaatagctttttcaaaattctccttctgtatgactttatcacagattgct 184

                                                                       
Query: 312 aatgcattttttgcagtgagctcgttaggcttgaatttcaacacaatgatcaagtccttc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aatgcattttttgcagtgagctcgttaggcttgaatttcaacacaatgatcaagtccttc 244

                                                                       
Query: 372 cttgcctttctaaactctagtagcccaatgtaagacatagctctgcggtgataggctttc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttgcctttctaaactctagtagcccaatgtaagacatagctctgcggtgataggctttc 304

                                                                       
Query: 432 aaattgttattatccaattcaattgcacgtttagcatcgtctaaagaactttggaagtta 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaattgttattatccaattcaattgcacgtttagcatcgtctaaagaactttggaagtta 364

                                                                       
Query: 492 tccaactttaggttggtgaacgcacggtttgaatataggatcgtattctcgggatcatgc 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tccaactttaggttggtgaacgcacggtttgaatataggatcgtattctcgggatcatgc 424

                                                                       
Query: 552 tcgatggcttttgtataatactcagctgcctttgcgtacagtttctccttcacgaacttg 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcgatggcttttgtataatactcagctgcctttgcgtacagtttctccttcacgaacttg 484

                                                                       
Query: 612 ttaccttcattctttagctctaaggctttctctggattacagggcttcacttcctcagtc 671
           |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 485 ttaccttcattcttcagctctaaggctttctctggattacaggctttcacttcctcagtc 544

                                                                       
Query: 672 atttattcaatagtagtgggaaaaaagcagccaactggtatggtatgtgccttttagtcc 731
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 545 atttattcaatagtagtggtaaaaaagcagccaactggtatggtatgtgcctttaagtcc 604

                                                                       
Query: 732 tcaagaccgataaacggagcccattttaaaagttttttctgatgtgagtcctttctcttc 791
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 605 tcaagaccgataaacggagcccatttt-aaagttttttctgatgtgagt-ctttctcttc 662

                                                                       
Query: 792 ttgatgttgacttggtgaattttttcatctcgatgtttcaatattaccgcgatgtgatga 851
           |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 663 ttgatgttgacttgttgatttttttcatctcgatgtttcaatattacggcgatgtgatga 722

                                                                       
Query: 852 gatgttatgtgaaagagatttgccaaagtgaaag-aagtactcaatttggaattgaacta 910
           ||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 723 gatgtaatgtg-aagagatttgcgaaagtgaaagaaagtactcaatttggaattgaacta 781

                               
Query: 911 ccttaattttttacttgaaa 930
           | | | |||| |||||||||
Sbjct: 782 cttaagttttctacttgaaa 801


>3x_Contig812 
          Length = 2325

 Score =  113 bits (57), Expect = 7e-25
 Identities = 101/109 (92%), Gaps = 5/109 (4%)
 Strand = Plus / Plus

                                                                        
Query: 48   tttaccttatagcgaaaatctcattaatcatataagaaatgaatgtcctcggttcatatt 107
            |||||||| ||| ||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 2198 tttaccttctag-gaaaatctcattaatcatataagaaatgaat-tcct-ggttcatatt 2254

                                                             
Query: 108  ggttaacatctgacaccagcattggccccagaatctgacttcacttgtt 156
            | ||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2255 g-ttaac-tctgacaccagcattggccccagaatctgaattcaattgtt 2301


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7528
Number of Sequences: 1807
Number of extensions: 7528
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)