BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZF07FM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1572                                                        1328   0.0  

>3x_Contig1572 
          Length = 12810

 Score = 1328 bits (670), Expect = 0.0
 Identities = 729/746 (97%), Gaps = 2/746 (0%)
 Strand = Plus / Plus

                                                                        
Query: 90   atggtaagatacctatcgatgtgaacgaaatgaaaatagatctgatgtccatttcctcac 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 atggtaagatacctatcgatgtgaacgaaatgaaaatagatctgatgtccatttcctcac 5059

                                                                        
Query: 150  acaaaatttatggtccaaagggaattggtgccatttacgttagaagaaagccaagagtca 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 acaaaatttatggtccaaagggaattggtgccatttacgttagaagaaagccaagagtca 5119

                                                                        
Query: 210  gattagatccttttatttccggtggtggtcaagaaagaggtttacgttctggtacattgg 269
            ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 gattagatccgcttatctccggtggtggtcaagaaagaggtttacgttctggtacattgg 5179

                                                                        
Query: 270  ctccacctttggttgccggcttcggggaagcagcaagattgatgatgaaagaatacgaga 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 ctccacctttggttgccggcttcggggaagcagcaagattgatgatgaaagaatacgaga 5239

                                                                        
Query: 330  acgactcaaatcacattaaaagattatctgacaaattaatgaacgctttgttatctattg 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 acgactcaaatcacattaaaagattatctgacaaattaatgaacgctttgttatctattg 5299

                                                                        
Query: 390  accatacaatcttaaacggttctgctgaccatcgttacccaggttgtgttaacatttcat 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 accatacaatcttaaacggttctgctgaccatcgttacccaggttgtgttaacatttcat 5359

                                                                        
Query: 450  tcgcatatgtcgaaggtgaatccttattgatggctcttagagatattgctttgagttctg 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5360 tcgcatatgtcgaaggtgaatccttattgatggctcttagagatattgctttgagttctg 5419

                                                                        
Query: 510  gttctgcttgtacttcggcatctttagaaccatcttatgtgttgcatgcattgggtaaag 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5420 gttctgcttgtacttcggcatctttagaaccatcttatgtgttgcatgcattgggtaaag 5479

                                                                        
Query: 570  atgatgctttagcacactctttcatcagattcggtattggtagattcaccactgatgaag 629
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 atgatgctttagcacactcttccatcagattcggtattggtagattcaccactgatgaag 5539

                                                                        
Query: 630  aaattgattacgttatcaaggctatcacggaaagagttgatttcctaagagagttgtccc 689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 aaattgattacgttatcaaggctatcacggaaagagttgatttcctaagagagttgtccc 5599

                                                                        
Query: 690  cattatggggagatggtcaaggaaggtattgacttgaactccatcgaatggtcagggtat 749
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||  
Sbjct: 5600 cattat-gggagatggtcaaggaaggtattgacttgaactccatcgaatggtca-ggtca 5657

                                                                        
Query: 750  ttaagctggaaccaaagtgaactatatcatagattcattattttattttcttgctagaag 809
            |||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||  
Sbjct: 5658 ttaagctggaacaaaagtgatctatatcatagattcatcattttattttcttgctagagt 5717

                                      
Query: 810  gcatacccaaattttatttggtttct 835
            ||||||| ||  ||||| ||||||||
Sbjct: 5718 gcataccaaatctttatctggtttct 5743


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7974
Number of Sequences: 1807
Number of extensions: 7974
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)