BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF07RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1682 1312 0.0
>3x_Contig1682
Length = 16889
Score = 1312 bits (662), Expect = 0.0
Identities = 761/782 (97%), Gaps = 9/782 (1%)
Strand = Plus / Plus
Query: 51 aaaatattacccggagtgaaggacatagcaactctcgagcaaaccacaaacacaggcggt 110
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7368 aaaatattagccggagtgaaggacatagcaact-tcgagcaaaccacaaacacaggcggt 7426
Query: 111 acccaagatagcaccatagccatcaggacaagctaattgcgtgccatcttcggacactgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7427 acccaagatagcaccatagccatcaggacaagctaattgcgtgccatcttcggacactgg 7486
Query: 171 gcaaaatcctgtatcatacatcatggggaaaacatttccgaccaaagtaatactagcgaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 gcaaaatcctgtatcatacatcatggggaaaacatttccgaccaaagtaatactagcgaa 7546
Query: 231 tgaagtacctagcacagaaataagaccagaacccacgtagtatgaagtaaatgggatagg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547 tgaagtacctagcacagaaataagaccagaacccacgtagtatgaagtaaatgggatagg 7606
Query: 291 gactcttgtaatttgtatggctgacatgagactagaaacgatcaacgaagctgaaaccaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7607 gactcttgtaatttgtatggctgacatgagactagaaacgatcaacgaagctgaaaccaa 7666
Query: 351 atattcttgaacactctgatcgaggtttatcattgttgatatcaaaattggaggcgaaat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7667 atattcttgaacactctgatcgaggtttatcattgttgatatcaaaattggaggcgaaat 7726
Query: 411 gacaccagccaacatagacaacgagtgttgcaacccaagaatcatacctagtacaacggg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7727 gacaccagccaacatagacaacgagtgttgcaacccaagaatcatacctagtacaacggg 7786
Query: 471 aacgtcagcattaagtgagaaaaacggttgatctctatgaacaagttcgacacctctttt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7787 aacgtcagcattaagtgagaaaaacggttgatctctatgaacaagttcgacacctctttt 7846
Query: 531 ccttgctaaatactcttggaatggatacgaaggagtgaaaaggaaagcgtaatcatagtc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7847 ccttgctaaatactcttggaatggatacgaaggagtgaaaaggaaagcgtaatcatagtc 7906
Query: 591 acctagaagaccatccttggtagtccattttctaaccactttttttcacaacatccttca 650
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7907 acctagaagaccatccttggtagtccattttctaaccac-ttttttcacaacatccttca 7965
Query: 651 caggtgctcttttcacattgtcctgctctacagcatcggccaaaaacttgatccatcttt 710
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7966 caggtgctcttttcacattgtcctgctctacagcatcggcc-aaaacttgatccatcttt 8024
Query: 711 ggggttataatatatcaaactgtttgggtaacagagcccttactttctttctagaatttc 770
||||||||||||||||||||||||| ||| ||||| |||||| ||| |||||||| |||
Sbjct: 8025 ggggttataatatatcaaactgttt-ggttacagaagccttac-ttccttctagaa-ttc 8081
Query: 771 ccacctggattc-aactgaatactcctactggttttcgaagaccccaaaacagaaaggga 829
||| || ||||| |||||||||||| ||||| | | || ||| | |||||||||||||||
Sbjct: 8082 cca-cttgattcaaactgaatactcttactgttatacg-agatcacaaaacagaaaggga 8139
Query: 830 cc 831
||
Sbjct: 8140 cc 8141
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6324
Number of Sequences: 1807
Number of extensions: 6324
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)