BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF08FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1693 1340 0.0
>3x_Contig1693
Length = 15531
Score = 1340 bits (676), Expect = 0.0
Identities = 771/791 (97%), Gaps = 10/791 (1%)
Strand = Plus / Plus
Query: 89 ttatatgggatcctaatggaatccatctcaaggacagtatgaaggaaatcaaatgcaatg 148
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 78 ttatatgggatcctaatggaatccatctcagggacagtatgaaggaaatcaaatgcaatg 137
Query: 149 aagtggatttcacagttttcaagtccttgacctcagatgatttgtctaccttcaattatc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aagtggatttcacagttttcaagtccttgacctcagatgatttgtctaccttcaattatc 197
Query: 209 aatacgaatctttcataatttggtccaaacttataattgatggattattcatgcttttca 268
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatacgaatcttccataatttggtccaaacttataattgatggattattcatgcttttca 257
Query: 269 cgggaaatttatacaaaccatggtatcatcttgagttggctccaattgaacatccggatt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cgggaaatttatacaaaccatggtatcatcttgagttggctccaattgaacatccggatt 317
Query: 329 ttgttcaatatttctccgaaagaacccacgatatataccagcgtttaaaagcgatagtgg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttgttcaatatttctccgaaagaacccacgatatataccagcgtttaaaagcgatagtgg 377
Query: 389 aactatttcctactcaggattccatttatcaaaatgccaatattttgatagaccttcggt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aactatttcctactcaggattccatttatcaaaatgccaatattttgatagaccttcggt 437
Query: 449 tggactacttcaatgacacggactttatacggcaactatcacagcattggttcgagaaac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggactacttcaatgacacggactttatacggcaactatcacagcattggttcgagaaac 497
Query: 509 ctgtcatacccagttatatagaccttagtttcttattttaaacgagatatacgtttaaaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgtcatacccagttatatagaccttagtttcttattttaaacgagatatacgtttaaaa 557
Query: 569 caggtttctacttaaatatacatagtttaattaactctccgaaagtatacatctaaatta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caggtttctacttaaatatacatagtttaattaactctccgaaagtatacatctaaatta 617
Query: 629 tgagccaaacaactgacccaattattgttataccaattacagcggtgatgataccagcac 688
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgagccaaacaactgacccaataattgttataccaattacagcggtgatgataccagcac 677
Query: 689 cggcttggtcacctttaccgattgttaagggtgccaaattagttggagattgttcggtac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cggcttggtcacctttaccgattgttaagggtgccaaattagttggagattgttcggtac 737
Query: 749 ctgcagctgggttaccagcccgaagtacacccgtcggcaagctgtgttatggagcaggcc 808
|||||||||||||||||| ||||||||| |||||| | ||||||| ||||||||||| |
Sbjct: 738 ctgcagctgggttaccag-ccgaagtaccaccgtcgtc-agctgtg-tatggagcagg-c 793
Query: 809 ctgtcccaaaccattttagtttttgcataaccttcttatgcaagccactttgttcacctt 868
|||||| || ||| |||| |||||||||| ||||| |||| ||||| |||||||||| |
Sbjct: 794 ctgtcc--aaacatcttaggttttgcataa-cttctaatgc-agcca-tttgttcacc-t 847
Query: 869 aaaccatattt 879
|||||||||||
Sbjct: 848 aaaccatattt 858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5915
Number of Sequences: 1807
Number of extensions: 5915
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)