BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF08RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1564 1283 0.0
>3x_Contig1564
Length = 11038
Score = 1283 bits (647), Expect = 0.0
Identities = 732/755 (96%), Gaps = 4/755 (0%)
Strand = Plus / Plus
Query: 55 aatgcaagttgtatcatgacaggatgctttttttcttcgtt-acaaattttgatttgatt 113
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2265 aatgcaagttctatcatgacaggatgctttttttcttcgttcacaaattttgatttgatt 2324
Query: 114 tgccgccttgacctataaggaaacagttgagatattagattgaaatctgtcccccacatt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2325 tgccgccttgacctataaggaaacagttgagatattagattgaaatctgtcccccacatt 2384
Query: 174 gataacgcctgataaaacttgatcatttcttcaatagtccatggatctgtaaactgctga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2385 gataacgcctgataaaacttgatcatttcttcaatagtccatggatctgtaaactgctga 2444
Query: 234 cgaccgtacgtagcagaattgtataaattttcgaatggattgttctgaattttttcttta 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2445 cgaccgtacgtagcagaattgtataaattttcgaatggattgttctgaattttttcttta 2504
Query: 294 gatgaattttcaagagacgcgttcttatgtctgtcgacaaccatagattcctcatcaaca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2505 gatgaattttcaagagacgcgttcttatgtctgtcgacaaccatagattcctcatcaaca 2564
Query: 354 accatagatccatctgcggccatcttcaattgaataccttgatggggtttctcatctggc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2565 accatagatccatctgcggccatcttcaattgaataccttgatggggtttctcatctggc 2624
Query: 414 acttccgtatcaaaaagatcctgggcggctttctttctttcctctttcaattgtttttct 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2625 acttccgtatcaaaaagatcctgggcggctttctttctttcctctttcaattgtttttct 2684
Query: 474 tcttccgttactagttcattcaaggacttgaactcttttctagccatttctcgtagttcc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2685 tcttccgttactagttcattcaaggacttgaactcttttctagccatttctcgtagttcc 2744
Query: 534 ctgcgttttcttctcctttcaatctttagcttggcagcttccttagccctgctaaaattc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2745 ctgcgttttcttctcctttcaatctttagcttggcagcttccttagccctgctaaaattc 2804
Query: 594 tcagatatttcacctatgggaagcgttggtttacataggtccgccatagttaagttttct 653
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2805 tcagatatttcacctatgggaagcgttggtttacataggtccgccatagtaaagttttct 2864
Query: 654 tcgtctatcaaatattttggatgaattcttgtcccgtattttctttggaatcat-tttaa 712
||||||||||| || ||||||||||| |||||| |||||||||||||||||| || ||
Sbjct: 2865 tcgtctatcaagta-tttggatgaatctttgtccgctattttctttggaatcatcttcaa 2923
Query: 713 aatggtaatggtgtatttctgataaagatcatcacccctttgggagaaatcgtccgaggt 772
| |||||||||||||||||||||||||||||||| |||||| ||| |||||| || |
Sbjct: 2924 attggtaatggtgtatttctgataaagatcatcagttctttggaagatatcgtcgcagtt 2983
Query: 773 ttcagaatcaccagcgtgtttttgcagttaatgaa 807
|||||| |||||||| || ||||||||||||||||
Sbjct: 2984 ttcagagtcaccagc-tggttttgcagttaatgaa 3017
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8868
Number of Sequences: 1807
Number of extensions: 8868
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)