BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF09RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1400 0.0
>3x_Contig1451
Length = 8346
Score = 1400 bits (706), Expect = 0.0
Identities = 783/802 (97%), Gaps = 5/802 (0%)
Strand = Plus / Plus
Query: 47 tgtcgtccgacacaacttttatcatcatcgtcatttgcttgcatgcagctggtcacaagc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6570 tgtcgtccgacacaacttttatcatcatcgtcatttgcttgcatgcagctggtcacaagc 6629
Query: 107 acgttggtttgcgatcacattcgaagttcgatactgtcatgtagctgcgtgttaggaacg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630 acgttggtttgcgatcacattcgaagttcgatactgtcatgtagctgcgtgttaggaacg 6689
Query: 167 acatgtgggaaataaaaaaatattatctgtcatgtcaatggtatttgtttattattatgg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6690 acatgtgggaaataaaaaaatattatctgtcatgtcaatggtatttgtttattattatgg 6749
Query: 227 ggtttaattatgcaatataagtcgtaaaaggtaaaactatgtagtatgtgtatatattga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6750 ggtttaattatgcaatataagtcgtaaaaggtaaaactatgtagtatgtgtatatattga 6809
Query: 287 ttcagaaagaaaactgttgacaagaaacatactctcatatatcaacaatcatgtcatgtt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6810 ttcagaaagaaaactgttgacaagaaacatactctcatatatcaacaatcatgtcatgtt 6869
Query: 347 attgtgtttaagtttttatttggtttagtgttttctatgtcaaatgtatttccatcacaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6870 attgtgtttaagtttttatttggtttagtgttttctatgtcaaatgtatttccatcacaa 6929
Query: 407 agtcctcaaagtataagaaagcttgtggccataggtttctcccgctggaagaacgacgct 466
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6930 agtcctaaaagtataagaaagcttgtggccataggtttctcccgctggaagaacgacgct 6989
Query: 467 cgatttccattcaggattgttgacagcgtcaatgtatctaccgggttcgcaacaaatacc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6990 cgatttccattcaggattgttgacagcgtcaatgtatctaccgggttcgcaacaaatacc 7049
Query: 527 agctctgttttcgtatttatctttgacatcgacgtaatcaccggtgtagacctggaaagt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7050 agctctgttttcgtatttatctttgacatcgacgtaatcaccggtgtagacctggaaagt 7109
Query: 587 tggctcagtggtagccacttccacttccaacttagcatcttcgttagatagtttaaacac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7110 tggctcagtggtagccacttccacttccaacttagcatcttcgttagatagtttaaacac 7169
Query: 647 cggtgttagcggagaagatcttgtatctagtttaacaggtaatccgcttacgaagcaaaa 706
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 7170 cggtgttagcggagaagatcttgtatctagtttagcaggtaatccgcttacgaagcagaa 7229
Query: 707 atctaagacaagtttcttctctgggatttcagtttgggaatcattgaaagtacccacttg 766
|||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct: 7230 atctaagacaggttccttctctgtgatttcagttggggaatcattgaaagtagccacttg 7289
Query: 767 gg-atatttcctttaatttcctggttggga-caacttgtttattcacttcgagaccggtg 824
|| ||||||| || | |||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct: 7290 ggtatatttctttaagtttcct-gttgggagcaacttg-ttattcacttcgagaccggtg 7347
Query: 825 gtgtccgaccaattgaacttta 846
||| ||| |||||| ||||||
Sbjct: 7348 ttgt-cgatcaattgtacttta 7368
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7329
Number of Sequences: 1807
Number of extensions: 7329
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)