BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF10FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1447 0.0
>3x_Contig1669
Length = 15503
Score = 1447 bits (730), Expect = 0.0
Identities = 782/794 (98%), Gaps = 4/794 (0%)
Strand = Plus / Minus
Query: 87 ctcgcaaacaacatgctatcttttggctcacatggtttactaaagcactggctcat-tga 145
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 933 ctcggaaacaacatgctatcttttggctcagatggtttactaaagcactggctcatatga 874
Query: 146 acctagtttgaactctaatgaaaaggcaaccaaggcgtttcactgtgtgcctaacctctt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 acctagtttgaactctaatgaaaaggcaaccaaggcgtttcactgtgtgcctaacctctt 814
Query: 206 gggtattttttggttgaataaaacaaggtttatgactgtggatgaaacttccgtcaagtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gggtattttttggttgaataaaacaaggtttatgactgtggatgaaacttccgtcaagtt 754
Query: 266 gtggaacgtaagccagagcgaccctgtcatatcttgggatggcctcaaggatttagaagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gtggaacgtaagccagagcgaccctgtcatatcttgggatggcctcaaggatttagaagg 694
Query: 326 cttacaatctgtagatttcaaaaataaatggctaattttgactttcgttaacgagatacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cttacaatctgtagatttcaaaaataaatggctaattttgactttcgttaacgagatacg 634
Query: 386 ggtctgggaaattaaaatcgatgactccagtatcgttaaggttaatgaattcgtcatttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggtctgggaaattaaaatcgatgactccagtatcgttaaggttaatgaattcgtcatttc 574
Query: 446 agtccccaataagattctcaattgtttgttgggattaacggaaaaatcgcttataatatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agtccccaataagattctcaattgtttgttgggattaacggaaaaatcgcttataatatt 514
Query: 506 aaatggtagttcaaaacaaaacgtaaagatttctatcttcgactttcaaggctccctttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaatggtagttcaaaacaaaacgtaaagatttctatcttcgactttcaaggctccctttt 454
Query: 566 acaacaaatcgatctttctcattcgctgacccaattccatcacacaaataatgaattagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acaacaaatcgatctttctcattcgctgacccaattccatcacacaaataatgaattagc 394
Query: 626 attgaacaggtcgacatcaaaattgcttgtgagattcgatacagaaactctgatttactc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attgaacaggtcgacatcaaaattgcttgtgagattcgatacagaaactctgatttactc 334
Query: 686 tttcgatcagaagaagaccattttattgtcttctaccgcagaatctgctatttcctcgat 745
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 333 tttcgatcagaagaagaccattttagtgtcttctaccgcagaatctgctatttcctcgat 274
Query: 746 ttttctcaatgatttggagtacactgtcaccgctttgaaagatggttcaatacttcgtga 805
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 273 tttcctcaatgatttggagtacactgtcaccgctttgaaggatggttcaatac-tcgtga 215
Query: 806 agtcaatcaaagaagatggtaaagtaattagaaaatacattcttttttgaacaccctgag 865
||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 214 agtcaatcaaagaagatggtaaagtaattagaaaatacaatc-attatgaacaccctgag 156
Query: 866 aagggttcccgctg 879
|| |||||||||||
Sbjct: 155 aa-ggttcccgctg 143
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6893
Number of Sequences: 1807
Number of extensions: 6893
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)