BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF11FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1457 1223 0.0
>3x_Contig1457
Length = 7441
Score = 1223 bits (617), Expect = 0.0
Identities = 721/751 (96%), Gaps = 4/751 (0%)
Strand = Plus / Plus
Query: 86 gtctgtaggtttgagtggatagcacggatgaaataatgcaaatggtaaaattatctctcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1753 gtctgtaggtttgagtggatagcacggatgaaataatgcaaatggtaaaattatcactcc 1812
Query: 146 tgaagaatcagggtcttgagtctgacaactctccattttgaagtacattactctgtccag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 tgaagaatcagggtcttgagtctgacaactctccattttgaagtacattactctgtccag 1872
Query: 206 acgcatcatgatttttccccagaataagacgcagtacatacttatcagactttatcccca 265
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 acgcatcatgacaatcccccagaataagacgcagtacatacttatcagactttatcccca 1932
Query: 266 agcaaaggccagtttatgccccacgtacacgtgacttcattctttcgaactaatttaccc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 agcaaaggccagtttatgccccacgtacacgtgacttcattctttcgaactaatttaccc 1992
Query: 326 ggttatcttctgtcactatcaacgaatagcgaactacattcagttcatgaaaaactcaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 ggttatcttctgtcactatcaacgaatagcgaactacattcagttcatgaaaaactcaga 2052
Query: 386 gaatctcgaaaagctaacagcgcatcatgaaagtcttgatctaatagttgttatattcat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 gaatctcgaaaagctaacagcgcatcatgaaagtcttgatctaatagttgttatattcat 2112
Query: 446 atatgggtgaatgtagggtttaattgtccaatagccttgtttattccattcagtgagctn 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 atatgggtgaatgtagggtttaattgtccaatagccttgtttattccattcagtgagctt 2172
Query: 506 tgaaagtaacaaatataaatacaacaatggatagctcggttccaggtggtcaaagaactc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 tgaaagtaacaaatataaatacaacaatggatagctcggttccaggtggtcaaagaactc 2232
Query: 566 ttcaaaagagaagaaatgctcaattgcaaaaggaaaagaaggctaaccaaacaccagctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2233 ttcaaaagagaagaaatgctcaattgcaaaaggaaaagaaggctaaccaaacaccagctt 2292
Query: 626 ctccaagacaggctggnatttggtggggtcttccagctctattttgaaagcttacacaga 685
|||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||
Sbjct: 2293 ctccaagacaggctgg-atttggt-ggttcttccagctctattttgaagctttacacaga 2350
Query: 686 tgaagccaatggtttgagagttgacccattggtggttttgttcttggctggtgccattgg 745
|||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct: 2351 tgaagccaatgggttgagagttgacccattggtggttttgttcttggctgttg-catttg 2409
Query: 746 gtttctctgntgttgctttgcacgtcgttgcttaaggctctggaaagaactttt-taaag 804
||||||| |||||||||||||||||||||| | | |||||| |||| ||||| ||||
Sbjct: 2410 tgttctctgttgttgctttgcacgtcgttgctaaggtctctggtaagatcttttaaaaag 2469
Query: 805 cttgaattccactcaatatctttaaaagaat 835
| |||||| |||||||||| ||||||||||
Sbjct: 2470 catgaattacactcaatatacttaaaagaat 2500
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7126
Number of Sequences: 1807
Number of extensions: 7126
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)