BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZF11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1372 0.0
>3x_Contig1757
Length = 24754
Score = 1372 bits (692), Expect = 0.0
Identities = 763/783 (97%), Gaps = 3/783 (0%)
Strand = Plus / Plus
Query: 48 cccttacagaaacgaattaccgaaaaacctttgttcccgtttgtttctactttgttacgc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15258 cccttacagaaacgaattaccgaaaaacctttgttcccgtttgtttctactttgttacgc 15317
Query: 108 aaatcctgtatgtttccagatggaaactcggaccatttcgcgtacagaacgttattacca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15318 aaatcctgtatgtttccagatggaaactcggaccatttcgcgtacagaacgttattacca 15377
Query: 168 agttattccgctcgggtctctccagttcgaaattcgtcgttcccaaccatacaatttctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15378 agttattccgctcgggtctctccagttcgaaattcgtcgttcccaaccatacaatttctc 15437
Query: 228 ctttgtttcgcatatgtttcctacagccattcggtttacattgaccatttccgttaagta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15438 ctttgtttcgcatatgtttcctacagccattcggtttacattgaccatttccgttaagta 15497
Query: 288 attgtctgttttgcccaacagcgtccgactcgaaaaattatgcgatgtatgggtgcggaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15498 attgtctgttttgcccaacagcgtccgactcgaaaaattatgcgatgtatgggtgcggaa 15557
Query: 348 gatcacggcagtagtctggcatcttcggaaaaagactgcccacacgtgaccgagtcggaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558 gatcacggcagtagtctggcatcttcggaaaaagactgcccacacgtgaccgagtcggaa 15617
Query: 408 cattgcgtgccagaacgtttcataacgagtcggtttttttcggagaaaatgcgtcagaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15618 cattgcgtgccagaacgtttcataacgagtcggtttttttcggagaaaatgcgtcagaaa 15677
Query: 468 cgggatgggaattggaaacaagtgcgaaacgacgtagaactgatctacaatatttatctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15678 cgggatgggaattggaaacaagtgcgaaacgacgtagaactgatctacaatatttatctt 15737
Query: 528 ttttcatcgtctgaatgctaacaatgtttgtaagttctttttaacaacgatgtcataccg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15738 ttttcatcgtctgaatgctaacaatgtttgtaagttctttttaacaacgatgtcataccg 15797
Query: 588 attagttacagataaaacagaataaaggggagggactttggtttgtaggtttggaataac 647
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15798 ataagttacagataaaacagaataaaggggagggactttggtttgtaggtttggaataac 15857
Query: 648 ttaaacttcataaaactatatacactggctttaagnttcccaaacttaagaagtgttgct 707
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 15858 ttaaacttcataaaactatatacactggctttaagttccccaaacttaagaagtgttgct 15917
Query: 708 ttcatttgactctttacgatgttctggcgggtccaaaagtgggataagttccaagtactt 767
|||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 15918 ttca-ttgactctttacgatgttctgg-gggtcgaaaagtgggataagttccaagtactc 15975
Query: 768 ttattttaatac-cccacctttacgggtgaacattgggctggttatcctgggaacccgaa 826
|||| |||||| || || || |||| ||||| ||| ||| |||| ||||||| |||||
Sbjct: 15976 atattctaatacaccgacattcacggctgaaccatggtctgtttatactgggaaaccgaa 16035
Query: 827 atc 829
|||
Sbjct: 16036 atc 16038
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5541
Number of Sequences: 1807
Number of extensions: 5541
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)