BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG01RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig754 1526 0.0
>3x_Contig754
Length = 2158
Score = 1526 bits (770), Expect = 0.0
Identities = 845/865 (97%), Gaps = 4/865 (0%)
Strand = Plus / Plus
Query: 47 acacaattcatatctaccattgcatcggcatttgtgacaatattggctacatatcatcag 106
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 acacaattcatatctaccattgcatcgccatttgtgacaatattggctacatatcatcag 804
Query: 107 tcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactcttg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcgataccagcctggcgtccagcagaactccagaactatccaactgcgatccaactcttg 864
Query: 167 caatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacgat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 caatttattgctaatacggttatagaagttactccgaagacttccatagacgaggacgat 924
Query: 227 ttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatattat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ttggatgcagatttaagtagatttgtgatacccaagaacttgaacaatcccacatattat 984
Query: 287 atcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 atcactctaacgaacaagcgaaagtccggtagggctatcaagaataagttcttaatcaat 1044
Query: 347 tcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tcgaaaacacatgattatgaatatgtgatagagaaacaagaaccagtaacggacgaaagt 1104
Query: 407 ccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagctg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ccagaaatgtttgagggtttaacaacattcaacttgaacacttcggagaaacagaagctg 1164
Query: 467 gcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gcaaaagaccaagtggaattgccatatcttgaagctcaatctttcaacagtggtggtgca 1224
Query: 527 attgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatccg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 attgtgtatgagtttgaaaaggatgatgattatgacgaagaagacccgtacgaagatccg 1284
Query: 587 ttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggttgaga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 ttctgatcgctagagtctcgggttattctagtttcatttaattctttctcgtggttgaga 1344
Query: 647 ttatcacaattacatagggaattgtctgtctactctatatgttctatgtactcatataag 706
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 ttatcacaattacata-ggaattgtctgtctactctatatgttctatgtactcatataag 1403
Query: 707 tgtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatcttgttttt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 tgtacgctttgacaatctgaaatgctattcatatttagcgcttttgataatcttgttttt 1463
Query: 767 atttccctgtagcatgtttacattctttgctttgacgcggcacagctttgctcttagacc 826
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct: 1464 atttccctgtagcatgtttacaatctttgctttgacgcgcaacagctttgctctaggacc 1523
Query: 827 tgtcgatgcaagtatctttatagctttttccaggg-tatcaattggctag-aattaggtt 884
|||||||||||||||||| ||||| |||||||| ||||| ||| ||| |||||||||
Sbjct: 1524 tgtcgatgcaagtatcttatcagcttcttccagggttatcagttgcttagaaattaggtt 1583
Query: 885 ggatanagt-ccaaaagctggaccc 908
| ||| ||| ||||||||| |||||
Sbjct: 1584 gaatagagtaccaaaagctagaccc 1608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6456
Number of Sequences: 1807
Number of extensions: 6456
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)