BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1392 0.0
>3x_Contig1786
Length = 33838
Score = 1392 bits (702), Expect = 0.0
Identities = 762/778 (97%), Gaps = 3/778 (0%)
Strand = Plus / Minus
Query: 86 cttccaagtaatttggttgctaacccagacttggtcgatgctgctaaggacgctgatatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23605 cttccaagtaatttggttgctaacccagacttggtcgatgctgctaaggacgctgatatc 23546
Query: 146 cttgtctttaacattcctcatcaattcttgccaagaatctgttctcaactaaagggtaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23545 cttgtctttaacattcctcatcaattcttgccaagaatctgttctcaactaaagggtaac 23486
Query: 206 gtgaagcctcaggctcgtgctatctcttgtttgaagggtttcgacgtcggtaaggatggt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23485 gtgaagcctcaggctcgtgctatctcttgtttgaagggtttcgacgtcggtaaggatggt 23426
Query: 266 gttaagctattgtctacttatatcaaggaaactttgaatatcgaatgtggtgctctatcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23425 gttaagctattgtctacttatatcaaggaaactttgaatatcgaatgtggtgctctatcc 23366
Query: 326 ggtgctaacttggctccagaagtcgccaaggaaaattggtccgaaaccactgttgcatac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23365 ggtgctaacttggctccagaagtcgccaaggaaaattggtccgaaaccactgttgcatac 23306
Query: 386 caaatcccagaagattacaagggtccaggtaaggatgttgaccattctttgttgaaagcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23305 caaatcccagaagattacaagggtccaggtaaggatgttgaccattctttgttgaaagcc 23246
Query: 446 ttgttccacagaccttacttccacgtcaacgtcattgaagatgttgctggtatttcggtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23245 ttgttccacagaccttacttccacgtcaacgtcattgaagatgttgctggtatttcggtc 23186
Query: 506 gcgggtgctttgaagaacgttatcgccttaggttgtggttacgttgaaggtttgggctgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23185 gcgggtgctttgaagaacgttatcgccttaggttgtggttacgttgaaggtttgggctgg 23126
Query: 566 ggtaacaacgccagtgctgccattcaaagagtcggtctctctgaaatgatcaaatttggt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23125 ggtaacaacgccagtgctgccattcaaagagtcggtctctctgaaatgatcaaatttggt 23066
Query: 626 cgtactttcttcccagaatgtaaggtcgaaacttacttccaagaatctgccggtgttgct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23065 cgtactttcttcccagaatgtaaggtcgaaacttacttccaagaatctgccggtgttgct 23006
Query: 686 gatttgatcaccacttgtgccggtggttgaaacctaagaagtgcgaaacacatggccttc 745
||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||
Sbjct: 23005 gatttgatcaccacttgtgccggtggtagaaacgtaagagttgcgaaacacatggccatc 22946
Query: 746 actggtaagtctgctgaagaagctgaaaaggagctattgaaccggtc-atccgctccagg 804
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 22945 actggtaagtctgctgaagaagctgaaaaggagctattgaa-cggtcaatccgctcaagg 22887
Query: 805 ttttatcaccactatagaagttcaccaataggttggctccctgtggtaagactgctga 862
| ||||||| |||| ||||| ||| ||| |||||||| |||||||||||||||||||
Sbjct: 22886 tattatcacaactaaggaagtccacgaat-ggttggctacctgtggtaagactgctga 22830
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5997
Number of Sequences: 1807
Number of extensions: 5997
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)