BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZG02RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1687                                                        1495   0.0  

>3x_Contig1687 
          Length = 12800

 Score = 1495 bits (754), Expect = 0.0
 Identities = 871/898 (96%), Gaps = 9/898 (1%)
 Strand = Plus / Minus

                                                                        
Query: 50   tgagggaatcatcccatgagggcaacgaaaagtcagacaaagagatcacataaagatgga 109
            ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 4103 tgagggaatcatcccatgagggcaa-gaaaagtaagacaaagagatcacataaagatgga 4045

                                                                        
Query: 110  aaagatgagtacacagttgtgtcttggaaaagaagttgaaatatctagaaaaattacgtt 169
            |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 4044 aaagatgagtacac-gttgt-tcttggaaaagaagttgaaatatctagaaaaatta-gtt 3988

                                                                        
Query: 170  gacatgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgct 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 gacatgaaaccagatacgaactcgtataaagagaaactcagcaaatacaagaaggttgct 3928

                                                                        
Query: 230  catctatttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccac 289
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 catct-tttggacaacggagaacctgatcaggatgatataacaactgtgcttcctcccac 3869

                                                                        
Query: 290  ggcggcacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaa 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3868 ggcggcacaacaaactgcaccttctaatacacttgctgcttcgctatcacagcagccgaa 3809

                                                                        
Query: 350  tggggcagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacc 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3808 tggggcagcaggggtagctcaggatcaacagataacgaggattaggtcacctatactacc 3749

                                                                        
Query: 410  tgcggctccgaaaactaagtttttacctgtacatcaacagtctcaaaatcaaccacaacg 469
            | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3748 tccgcctccgaaaactaagtttttacctctacatcaacagtctcaaaatcaaccacaacg 3689

                                                                        
Query: 470  ttctggcatgattaagcctgctcattctcatgaacgagcattggaatccttagcatctga 529
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3688 ttctggcatgattaagcctcctcattctcatgaacgagcattggaatccttagcatctga 3629

                                                                        
Query: 530  ttctctcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagtt 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3628 ttctctcgaatcaatcgattattcacgttgcattttcgcaaaatacaacttgaaagagtt 3569

                                                                        
Query: 590  cttgtcatatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacac 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3568 cttgtcatatgatccagctttcgaatttgatgaacaattgagtagagcgtttttggacac 3509

                                                                        
Query: 650  ctactttacaagacttcaattcaaatatccacttctagatgaacaagagcattacacttt 709
            |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 3508 ctactttacaagacttcaattcaaatatccacttctagatgaacaagagatttacacttt 3449

                                                                        
Query: 710  ccacaatgattatgttaataataatgttcactcatattcaatcaatgaattccatttctc 769
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3448 ccacaatgattatattaataataatgttcactcatattcaatcaatgaattccatttctc 3389

                                                                        
Query: 770  ctgtggtagaatgtggttagttttcagcatttgagcccatttacacaagaccactggaaa 829
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3388 ctgtggtagaatgtggttagttttcagcatttcagcccatttacacaagaccactggaaa 3329

                                                                        
Query: 830  ataccatgggttgcctgcaaaaagatatttctcacctgcgattcgtcatattcacc-aat 888
            |||||| ||||||||| |||| |||||||||||| |||| |||||||||| ||||| |||
Sbjct: 3328 ataccaggggttgcctccaaatagatatttctcaactgcaattcgtcata-tcaccaaat 3270

                                                                      
Query: 889  gtggaaacaattttgacttttgtttcaaaagattgaaggtctcaatttgctcatcttg 946
            |||| ||||| ||||||||||| ||||| ||||||||| ||||| |||||||||||||
Sbjct: 3269 gtgg-aacaaatttgacttttg-ttcaacagattgaagttctcattttgctcatcttg 3214


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7240
Number of Sequences: 1807
Number of extensions: 7240
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)