BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG03FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 1045 0.0
>3x_Contig1400
Length = 8536
Score = 1045 bits (527), Expect = 0.0
Identities = 578/591 (97%), Gaps = 3/591 (0%)
Strand = Plus / Minus
Query: 270 cctcaattgatcattgctactcatatctcgtttgcactattgctttgcgtgttgggatcg 329
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8536 cctcaattgatcattgctactcatatctcgtttgcactaatgctttgcgtgttgggatcg 8477
Query: 330 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 8417
Query: 390 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 8357
Query: 450 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 8297
Query: 510 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 8237
Query: 570 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 8177
Query: 630 tttctgattagactacattggacagtaagtaaaatca-ttttaaacgcaataaccactgc 688
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 8176 tttctgattagactacattggacagtaagtaaaatcatttttaaacgcaataaccactgc 8117
Query: 689 atagacttgtaacattttgggaaccatataaaatttaattcaaataccaaggttgcagaa 748
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 8116 atagacttgtaaca-tttgggaaccatataaaatttaattcaaatacaaaggttgcagaa 8058
Query: 749 gccattatttcgtcagattactacgatctattatatacaacgttttggttaaggcacatt 808
|||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 8057 gccattatttcgtcagattactacgatctattatatacaacgttgt-gtaaaggcacatc 7999
Query: 809 ctaaatagctgccttccggttcctttttcatttttcggtattggttcatgc 859
|||||||||||||||||| ||||||||||| | |||| ||||| |||||||
Sbjct: 7998 ctaaatagctgccttccgtttcctttttcactcttcgttattgtttcatgc 7948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,268
Number of Sequences: 1807
Number of extensions: 14268
Number of successful extensions: 197
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)