BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG04FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig333 480 e-135
3x_Contig1284 464 e-130
>3x_Contig333
Length = 1390
Score = 480 bits (242), Expect = e-135
Identities = 315/334 (94%), Gaps = 4/334 (1%)
Strand = Plus / Minus
Query: 483 cgcttgaacatttttctttccgtttgagctctcacacattgtgcgcatagtccactgaaa 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1387 cgcttgaacatttttctttccgttggagctctcacacattgtgcgcatagtccactgaaa 1328
Query: 543 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcattatcatacggac 602
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1327 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 1268
Query: 603 gacagacaacatccagtcatttcaagattttactgaaacttgaagggattcaaaaacatt 662
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 1267 gacagacaacatccagtcatttcaagaatttactgaaacttgaagggattcaaaaacaat 1208
Query: 663 accagatagattgcgcttttaataggcagagggcccaaatagatagtcgactgttatcaa 722
||||||||||| |||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 1207 accagatagatagcgc-tttaataggcaga-ggcacaaatagatagtcgactgttatcaa 1150
Query: 723 gatttcaagcagtatcagttggatttaacggctcttctttaa-tttattcccttcagcct 781
||||||||| ||||||||||| ||||| | |||||||||||| |||||||| ||||| ||
Sbjct: 1149 gatttcaaggagtatcagttgtatttatctgctcttctttaattttattcctttcag-ct 1091
Query: 782 ttggttaaaacagtttttgaaggtttggtacaat 815
|| ||| | |||||||||||| ||||||||||||
Sbjct: 1090 tttgttcagacagtttttgaaagtttggtacaat 1057
>3x_Contig1284
Length = 6170
Score = 464 bits (234), Expect = e-130
Identities = 234/234 (100%)
Strand = Plus / Plus
Query: 87 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5937 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 5996
Query: 147 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 6056
Query: 207 gctttatttctgggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057 gctttatttctgggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 6116
Query: 267 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6117 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 6170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7530
Number of Sequences: 1807
Number of extensions: 7530
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)