BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG04RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1267 0.0
>3x_Contig1529
Length = 11812
Score = 1267 bits (639), Expect = 0.0
Identities = 661/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 47 agacatcgcttataattcgatctgattagcctgggagattttgaaatgggtctctttgaa 106
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10443 agacatcgcttataattcgatctgattagcctgggagattttcaaatgggtctctttgaa 10502
Query: 107 tgaatacttaccaatttcaactgtttgaaagtgatattgactatttggtgtgaataatat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10503 tgaatacttaccaatttcaactgtttgaaagtgatattgactatttggtgtgaataatat 10562
Query: 167 ataagagattatttggatttcctgcagagggaaaaaggcaggaaaggaagcagggattat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10563 ataagagattatttggatttcctgcagagggaaaaaggcaggaaaggaagcagggattat 10622
Query: 227 ataggacatcctatggcctattcactagttcaattgaaccaaaaacttacagcattacta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10623 ataggacatcctatggcctattcactagttcaattgaaccaaaaacttacagcattacta 10682
Query: 287 ggctaaccagttgttattcgttcaacgtttcgtatttgctgtataaccactggatacctt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10683 ggctaaccagttgttattcgttcaacgtttcgtatttgctgtataaccactggatacctt 10742
Query: 347 tcctcctataactcacgtgatattagggtgatcacgtgagtttcgtaacaaacgactgag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10743 tcctcctataactcacgtgatattagggtgatcacgtgagtttcgtaacaaacgactgag 10802
Query: 407 taccttgaaaaggcagcaccagtatgaaaaaaattgtttgttcgaaaggcgatatcatgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10803 taccttgaaaaggcagcaccagtatgaaaaaaattgtttgttcgaaaggcgatatcatgg 10862
Query: 467 aaagattaaaaacgattgcaattgaacaaatatctgtaagttcaacaaatgtacactttc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10863 aaagattaaaaacgattgcaattgaacaaatatctgtaagttcaacaaatgtacactttc 10922
Query: 527 gggacccagatttatagctgattgaaagactaccaagggctctaatctttcattttattt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10923 gggacccagatttatagctgattgaaagactaccaagggctctaatctttcattttattt 10982
Query: 587 tcagctatccaccaaatggcaggttgtatgttacatgtggttaaactctggaatattttc 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10983 tcagctatccaccaaatggcaggttgtatgttacatgtggttaaactctggaatatttcc 11042
Query: 647 cattaacttgcctttaagttcattttctttttcggtacctgaaattttcgggttgaaggt 706
|||||||||||||||| ||||||| ||||||||||||||||||||| || ||||||||||
Sbjct: 11043 cattaacttgcctttaggttcattctctttttcggtacctgaaattatc-ggttgaaggt 11101
Query: 707 actgcaa 713
|||||||
Sbjct: 11102 actgcaa 11108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8933
Number of Sequences: 1807
Number of extensions: 8933
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)