BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG05FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig668 714 0.0
3x_Contig966 163 8e-40
>3x_Contig668
Length = 3128
Score = 714 bits (360), Expect = 0.0
Identities = 377/380 (99%), Gaps = 2/380 (0%)
Strand = Plus / Minus
Query: 88 tcatgttccaattgttagtgtcagtgtataaatataggtgcattttctcactcactttgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatgttccaattgttagtgtcagtgtataaatataggtgcattttctcactcactttgg 321
Query: 148 tattaaatacgacaggcgcaacctactacttagaggaaaaggaaaggaaaccagctctga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tattaaatacgacaggcgcaacctactacttagaggaaaaggaaaggaaaccagctctga 261
Query: 208 taagtaagaaagactgtgacagtagtaattactaataattaatattaatgcttgagaaat 267
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taagtaagaaagacggtgacagtagtaattactaataattaatattaatgcttgagaaat 201
Query: 268 tgagtagttacttcacgggaccagagttgtctgatccattgctaagctggtcatttgatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgagtagttacttcacgggaccagagttgtctgatccattgctaagctggtcatttgatc 141
Query: 328 catcttct-gaaaacttgtactatagacatttgcatgaagcct-tgatatcttttgtggt 385
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 140 catcttctggaaaacttgtactatagacatttgcatgaagcctatgatatcttttgtggt 81
Query: 386 gtatcaattcattctatatccatttgtggtgccaaaacttaacgaatggttcttcaaaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gtatcaattcattctatatccatttgtggtgccaaaacttaacgaatggttcttcaaaga 21
Query: 446 gcattacacagaaagggatg 465
||||||||||||||||||||
Sbjct: 20 gcattacacagaaagggatg 1
>3x_Contig966
Length = 4228
Score = 163 bits (82), Expect = 8e-40
Identities = 163/186 (87%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 685 tgttccacgctgtggcagcattcgctgttctgaccattaccctgcacccggtatgcccag 744
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 1 tgttacacgctgtggcagcattcgctgttctgaccattaccttgcacccggtatgccaag 60
Query: 745 catggatcgggatatttttgtcattcaagccttaacctccg-ttgttaacatcaattggt 803
|||||||||| | ||| ||||||||| || | | | ||||| |||| |||||||||||||
Sbjct: 61 catggatcggaagattcttgtcattcgaggcctcaactccgtttgtcaacatcaattggt 120
Query: 804 acatcatccaattggccccttggatcctttaagcaagggggttcctccctgtttcaacgc 863
||||||||||||| | ||| |||||||| |||| ||| ||||||| |||| |||||||
Sbjct: 121 acatcatccaatt-gtcccgtggatcctcgaagc-aggtggttcctacctggttcaacgt 178
Query: 864 attgaa 869
||||||
Sbjct: 179 attgaa 184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6246
Number of Sequences: 1807
Number of extensions: 6246
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)