BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG05RM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1551 1413 0.0
3x_Contig1609 866 0.0
>3x_Contig1551
Length = 9073
Score = 1413 bits (713), Expect = 0.0
Identities = 740/749 (98%)
Strand = Plus / Plus
Query: 48 cggaaataaaacatttgtcgggaatgatgttctacgccagataagatgggctcgagtgta 107
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 393 cggaaataaaacatttgtcgggaatgatgttctacgccagaaaagatgggctcgagtgta 452
Query: 108 tatttacacaggtcttgtgagccggttggttttagttattcgtacagtagtttatctggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatttacacaggtcttgtgagccggttggttttagttattcgtacagtagtttatctggt 512
Query: 168 ttagcaggtttgttcccgcctggcggtattcgtaaagttttctctgattcccagcaattg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttagcaggtttgttcccgcctggcggtattcgtaaagttttctctgattcccagcaattg 572
Query: 228 accattgattagctttgctgattcattattaggggaaaaaagtgtgtgggtgcgattgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 accattgattagctttgctgattcattattaggggaaaaaagtgtgtgggtgcgattgat 632
Query: 288 ctattcccgaatgcctaaaagcagaaacaagccgacgagatcatgtcttatgtgccaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctattcccgaatgcctaaaagcagaaacaagccgacgagatcatgtcttatgtgccaaag 692
Query: 348 acgtaagaagaagtgtgatcggaaagcacccagttgttcagcgtgtttgaaaaaaggcta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acgtaagaagaagtgtgatcggaaagcacccagttgttcagcgtgtttgaaaaaaggcta 752
Query: 408 tgaatgcatctacaatgtgaatctgcaatcgcagttggtcgatggaacaaagcaactatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgaatgcatctacaatgtgaatctgcaatcgcagttggtcgatggaacaaagcaactatc 812
Query: 468 caagtcgcaactgatagctaaaattggcattctcacatcacaacttcgtgaaaaatccga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 caagtcgcaactgatagctaaaattggcattctcacatcacaacttcgtgaaaaatccga 872
Query: 528 caaaaacaccggtaatccgttgactaaactttggtacacatcttccaagtatggaagagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 caaaaacaccggtaatccgttgactaaactttggtacacatcttccaagtatggaagagt 932
Query: 588 gttgacatatggaccaacatcagttcgatgtttgataaagtcgtctcgtatggtgtggta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 933 gttgacatatggaccaacatcagttcgatgtttgataaagtcgtctcgtatggggtggta 992
Query: 648 ctactctgagatttggaaaactattaaagaaaagcggaacgaatggaagaagaaacacgt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 ctactctgagatttggaaaactattaaagaaaagcggaacgaatggaagaagaaacacgt 1052
Query: 708 ttatgccattaaaatgaatgaagtttactccgttggcaatccaattcttttaagaagtgg 767
| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 tcatgccatcaaaatggaggaagtttactccgttggcaatccaattcttttaagaagtgg 1112
Query: 768 aaattctgtgctatatgccttttgcggct 796
|||||||||||| ||||||| |||||||
Sbjct: 1113 taattctgtgctagatgccttgtgcggct 1141
>3x_Contig1609
Length = 15966
Score = 866 bits (437), Expect = 0.0
Identities = 673/749 (89%), Gaps = 2/749 (0%)
Strand = Plus / Plus
Query: 48 cggaaataaaacatttgtcgggaatgatgttctacgccagataagatgggctcgagtgta 107
|||||||||| ||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct: 7072 cggaaataaagtatttgtcgggaattgtgttctacgcttgaaaagatgggctcgagtgta 7131
Query: 108 tatttacacaggtcttgtgagccggttggttttagttattcgtacagtagtttatctggt 167
|||||||||||| ||||||||||| || ||||||||||||||| ||||| ||||||||||
Sbjct: 7132 tatttacacaggccttgtgagccgattagttttagttattcgtgcagtaatttatctggt 7191
Query: 168 ttagcaggtttgttcccgcctggcggtattcgtaaagttttctctgattcccagcaattg 227
|||||| ||| ||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 7192 ttagcatgttcgttcccgcctggcggtattcgtaaaattttctctgaatcccagcaattg 7251
Query: 228 accattgattagctttgctgattcattattaggggaaaaaagtgtgtgggtgcgattgat 287
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||
Sbjct: 7252 accattgattagctttgctgatccattattaggggaaaaaagtgcgtgagtgcgagtgat 7311
Query: 288 ctattcccgaatgcctaaaagcagaaacaagccgacgagatcatgtcttatgtgccaaag 347
|||||| |||||||||||||||||||||| |||| ||||||| ||| |||||||||||
Sbjct: 7312 ctattctggaatgcctaaaagcagaaacaacccgaagagatcaagtccgatgtgccaaag 7371
Query: 348 acgtaagaagaagtgtgatcggaaagcacccagttgttcagcgtgtttgaaaaaaggcta 407
|||||| ||||||| |||||| |||||| ||||||||||||| |||||||| |||| |||
Sbjct: 7372 acgtaaaaagaagtatgatcgaaaagcagccagttgttcagcatgtttgaagaaagacta 7431
Query: 408 tgaatgcatctacaatgtgaatctgcaatcgcagttggtcgatggaacaaagcaactatc 467
|||||| ||| ||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct: 7432 tgaatgtgtctgcaatgtgaatctgcaattgcagctggtcgatggaacaaagtaactatc 7491
Query: 468 caagtcgcaactgatagctaaaattggcattctcacatcacaacttcgtgaaaaatccga 527
||||||||| ||||||||||||||||| ||||||| ||||||||||||| | |||| ||
Sbjct: 7492 caagtcgcacctgatagctaaaattggaattctcaagtcacaacttcgtg-agaatcgga 7550
Query: 528 caaaaacaccggtaatccgttgactaaactttggtacacatcttccaagtatggaagagt 587
||||||||||| | | |||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 7551 caaaaacaccgctgacccgttgaccaaactttggtacaattcttctaagtatggaagagt 7610
Query: 588 gttgacatatggaccaacatcagttcgatgtttgataaagtcgtctcgtatggtgtggta 647
||||||||||||| |||| ||||||||||| ||||||| |||||||| |||| |||| |
Sbjct: 7611 gttgacatatggatcaacgtcagttcgatgattgataatatcgtctcgaatggggtggca 7670
Query: 648 ctactctgagatttggaaaactattaaagaaaagcggaacgaatggaagaagaaacacgt 707
||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||
Sbjct: 7671 ctactctgagatttggaaaactattgaagaaaagctgaacgaatgg-agaagaaatacgt 7729
Query: 708 ttatgccattaaaatgaatgaagtttactccgttggcaatccaattcttttaagaagtgg 767
| ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 tcatgtcattgaaatggatgaagtttactccgttggcaatccaattcttttaagaagtgg 7789
Query: 768 aaattctgtgctatatgccttttgcggct 796
|| || ||| || ||||||| |||||||
Sbjct: 7790 taactcggtgttagatgccttgtgcggct 7818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7265
Number of Sequences: 1807
Number of extensions: 7265
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)