BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZG06FM1.SCF screened BAC_end
         (972 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1778                                                        1421   0.0  

>3x_Contig1778 
          Length = 27694

 Score = 1421 bits (717), Expect = 0.0
 Identities = 738/743 (99%), Gaps = 2/743 (0%)
 Strand = Plus / Minus

                                                                         
Query: 89    ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 148
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16169 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 16110

                                                                         
Query: 149   aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 208
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16109 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 16050

                                                                         
Query: 209   gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 268
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16049 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 15990

                                                                         
Query: 269   atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 328
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15989 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 15930

                                                                         
Query: 329   acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 388
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 15870

                                                                         
Query: 389   ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 15810

                                                                         
Query: 449   tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 508
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15809 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 15750

                                                                         
Query: 509   tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 568
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 15690

                                                                         
Query: 569   atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 628
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15689 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 15630

                                                                         
Query: 629   gagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttntcactcctcag 688
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15629 gagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttttcactcctcag 15570

                                                                         
Query: 689   gcgcaatttcaaaatgtccttcanatttgactgcagactccacattttctttccagagat 748
             ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 15569 gcgcaatttcaaaatgtccttcaaatttgactgcagactccacaatttctttccagagat 15510

                                                                         
Query: 749   gatgtccagagatgttataattcctgactta-aagcgacgacaagctgctttgcaaaacc 807
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 15509 gatgtccagagatgttataattcctgacttagaagcgacgacaagctgctttgcaaaacc 15450

                                    
Query: 808   aaatcgtacgttttagatctcgc 830
             |||||||||| ||||||||||||
Sbjct: 15449 aaatcgtacg-tttagatctcgc 15428


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6099
Number of Sequences: 1807
Number of extensions: 6099
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)