BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG06RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1374 0.0
>3x_Contig1680
Length = 12597
Score = 1374 bits (693), Expect = 0.0
Identities = 842/880 (95%), Gaps = 9/880 (1%)
Strand = Plus / Minus
Query: 48 ttaatttgctcgaagacttgacgcctgaataatattc-aatgcgtctgatcatttctgca 106
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6802 ttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttctgca 6743
Query: 107 tttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatctatat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6742 tttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatctatat 6683
Query: 167 cattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttcactgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6682 cattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttcactgt 6623
Query: 227 tttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctttaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6622 tttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctttaaa 6563
Query: 287 gttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaagagaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6562 gttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaagagaag 6503
Query: 347 tgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgcgagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6502 tgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgcgagg 6443
Query: 407 acagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaaggaga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6442 acagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaaggaga 6383
Query: 467 aagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaaactt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6382 aagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaaactt 6323
Query: 527 acaacttcaaagcctttggcttttcccatgggtattcttggttagtgaagtgaccgtang 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6322 acaacttcaaagcctttggcttttcccatgggtattcttggttagtgaagtgaccgta-g 6264
Query: 587 aagcggttggcaagtagattggtctagccaaatctaatttcttcacaaggacaccangtc 646
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 6263 aagcggttggcaagtagattggtctagccaaatctaattccttcacaaggacaccaggtc 6204
Query: 647 tcaagtcgaagttcttcttgatgatttcaat-acttcttcatctgggatgttagcggtac 705
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 6203 tcaagtcgaagttcttcttgatgatttcaataacttcttcatctgggatggtagcggtac 6144
Query: 706 cataggtgtcgacatgcaaggataaagggtcagcgataccggatgcgtaagaagaattgg 765
|||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct: 6143 cataggtgtcgacatgcaaggataaaggttcagcgataccgatagcgtaag-agaattgg 6085
Query: 766 acttgaacttttttacagataccagcgtggaccaaagacttaacaaccccatcta-cggg 824
||||||||| | |||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 6084 acttgaactctcttacagataccagcgtggaccaaagacttagcaa-cccatctagcggc 6026
Query: 825 gttagccgccgaaccggtcgacctttgaataattccttaccggaaaaagcccccccaccc 884
|| ||| || ||| ||||||||||| || ||| ||||||||||| ||||| || |||||
Sbjct: 6025 gtaagcagcggaa-cggtcgaccttggagtaa-tccttaccggagaaagcaccaccaccg 5968
Query: 885 ccggcagtaactcccccgctaagcattgacgataatcttt 924
| |||| | | || ||| ||||||| |||||||||||||
Sbjct: 5967 acagcagaagcaccaccg-taagcatcgacgataatcttt 5929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7499
Number of Sequences: 1807
Number of extensions: 7499
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)