BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG07FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1525 1249 0.0
>3x_Contig1525
Length = 8924
Score = 1249 bits (630), Expect = 0.0
Identities = 670/678 (98%), Gaps = 4/678 (0%)
Strand = Plus / Plus
Query: 84 cttaatgtacgccaatagagattcaacaagttacattgttggggaactgtactaaatcag 143
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2228 cttaatgtac-ccaata-agattcaacaagttacattgttggggaactgtactaaatcag 2285
Query: 144 cgtcctttttaaagtttgtcaatacaatttcggaaaacatagtattcgtccgtggagaat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 cgtcctttttaaagtttgtcaatacaatttcggaaaacatagtattcgtccgtggagaat 2345
Query: 204 tcgatccagctacagtttcaaccaccaaaaacccagccgaggagatgccgctaagtactg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 tcgatccagctacagtttcaaccaccaaaaacccagccgaggagatgccgctaagtactg 2405
Query: 264 tcatatcccaaggacctttcagaattggatgctgcaatggctatactttagtacccaaga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 tcatatcccaaggacctttcagaattggatgctgcaatggctatactttagtacccaaga 2465
Query: 324 atgatcctctatcattattaacattagccagacaattagatgtggatattctactctggg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 atgatcctctatcattattaacattagccagacaattagatgtggatattctactctggg 2525
Query: 384 gaggaacgcataatgtcgaggcatacacgctggagggaaaattctttataaaccctggat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 gaggaacgcataatgtcgaggcatacacgctggagggaaaattctttataaaccctggat 2585
Query: 444 catgtacaggagcgttcagtacagattgggtacaagaagatgtagaagaaaattacaaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 catgtacaggagcgttcagtacagattgggtacaagaagatgtagaagaaaattacaaaa 2645
Query: 504 ctagcgaacaacaagaaccagccgaggcttcaacgaatggttcgaatcagcagccgaagg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 ctagcgaacaacaagaaccagccgaggcttcaacgaatggttcgaatcagcagccgaagg 2705
Query: 564 aaattaaagaggaaattaaagagccttcaaacaacgactcagaaaaaagtggtgaagata 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 aaattaaagaggaaattaaagagccttcaaacaacgactcagaaaaaagtggtgaagata 2765
Query: 624 aggctgacattatagaggataaaggcaattctgaagaacatttacaagaagggaaagagt 683
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2766 aggctgacattatagaggataaaggcaattctgaagaacatctacaagaagggaaagagt 2825
Query: 684 ttgaacatgattccagtgatgatgagttcgatgactttgacattaacggtggaaagaatc 743
|||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct: 2826 atgaacatgattccagtgatgatgagttcgatgacattgacattaacggtgg-aggaat- 2883
Query: 744 ccccagtttctgtcttct 761
||||||||||||||||||
Sbjct: 2884 ccccagtttctgtcttct 2901
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6354
Number of Sequences: 1807
Number of extensions: 6354
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)