BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZG07RM1.SCF screened BAC_end
         (951 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1496                                                        1296   0.0  

>3x_Contig1496 
          Length = 9544

 Score = 1296 bits (654), Expect = 0.0
 Identities = 684/690 (99%), Gaps = 3/690 (0%)
 Strand = Plus / Plus

                                                                        
Query: 46   tttctatcatgcctctgtgttccagagcatgttccggcttctagatgttatcacccttat 105
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 tttctatcatgc-tctgt-ttccagagcatgttccggcttctagatgttatcacccttat 3011

                                                                        
Query: 106  tgagctagcgtctgggaatattccagctcactcttctagcttgaacaagaccccaatcgt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3012 tgagctagcgtctgggaatattccagctcactcttctagcttgaacaagaccccaatcgt 3071

                                                                        
Query: 166  ttcctttcgctcctgcaacgattatatcgaacagaaatcagctgaagattatagcagaat 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3072 ttcctttcgctcctgcaacgattatatcgaacagaaatcagctgaagattatagcagaat 3131

                                                                        
Query: 226  tcacccagcggtacaatcagaagataacccagaagaattagaagaatcatatggtaaagt 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3132 tcacccagcggtacaatcagaagataacccagaagaattagaagaatcatatggtaaagt 3191

                                                                        
Query: 286  acaagagaatgattccttcctaaatgatacgaagaaatgtgtatggatgagatatccacc 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3192 acaagagaatgattccttcctaaatgatacgaagaaatgtgtatggatgagatatccacc 3251

                                                                        
Query: 346  gatatttattaatctattgcggttcgctcttccaaaaatagttcaagatattatctggtt 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3252 gatatttattaatctattgcggttcgctcttccaaaaatagttcaagatattatctggtt 3311

                                                                        
Query: 406  caagtttataaagtttgttacttttgatgggaaatgtgcgttgatatatgccaacaaatc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3312 caagtttataaagtttgttacttttgatgggaaatgtgcgttgatatatgccaacaaatc 3371

                                                                        
Query: 466  aattccgcttgacgagtctcaatttaatgcaaagagtttaatatcatatgctagaggttc 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3372 aattccgcttgacgagtctcaatttaatgcaaagagtttaatatcatatgctagaggttc 3431

                                                                        
Query: 526  tctttatttcggcaattcaaacttatctgatgaagaactactagcaaagcttgtgctcgt 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3432 tctttatttcggcaattcaaacttatctgatgaagaactactagcaaagcttgtgctcgt 3491

                                                                        
Query: 586  ggctgaacctacattcctgaagcaaaaattcatccttctctcggagttcactaaagtcgt 645
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3492 ggctgaacctacattcctgaagcaaaaattcatccttctctcggagttcactaaggtcgt 3551

                                                                        
Query: 646  atctgcaagcctaagtgatcgcgacttggtacatcagaaagttgatcaattgacgcaata 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3552 atctgcaagcctaagtgatcgcgacttggtacatcagaaagttgatcaattgacgcaata 3611

                                          
Query: 706  tgtcaatggtaatattcggactcacatttt 735
            ||||||| |||||  |||||||||||||||
Sbjct: 3612 tgtcaat-gtaattatcggactcacatttt 3640


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6586
Number of Sequences: 1807
Number of extensions: 6586
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)