BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZG08FM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1142                                                        1279   0.0  

>3x_Contig1142 
          Length = 5741

 Score = 1279 bits (645), Expect = 0.0
 Identities = 732/757 (96%), Gaps = 3/757 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   taccaccggtttggtccacttcattgataagatttaatgattttttcctaacattaacat 145
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 taccaccggtttgttccacttcattgataagatttaatgattttttcctaacattaacat 1240

                                                                        
Query: 146  catctgaccgcatccatgaatctgaaattaacaaagtatcaatagcagcaagctcagccg 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 catctgaccgcatccatgaatctgaaattaacaaagtatcaatagcagcaagctcagccg 1180

                                                                        
Query: 206  cttttgtgatctcatgttcaccataccaagctttgaaatcatctttgtttaaatgatcca 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 cttttgtgatctcatgttcaccataccaagctttgaaatcatctttgtttaaatgatcca 1120

                                                                        
Query: 266  aaaaatcgtccattaccaaggcttcctttgaattttttgcatcttcaagcttatgtttat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 aaaaatcgtccattaccaaggcttcctttgaattttttgcatcttcaagcttatgtttat 1060

                                                                        
Query: 326  aagccggatcctttaatacctcatctataccttgtaagtatcctgtagagcaatgtgcga 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 aagccggatcctttaatacctcatctataccttgtaagtatcctgtagagcaatgtgcga 1000

                                                                        
Query: 386  ccaaaaacttgccagtatttgcaaggatttttttattctgatcttcttgtgcatattgca 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  ccaaaaacttgccagtatttgcaaggatttttttattctgatcttcttgtgcatattgca 940

                                                                        
Query: 446  ttaccttgtcatataaagtctttgcgtaaaaccctggtgaacaaattatgatgcatttca 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  ttaccttgtcatataaagtctttgcgtaaaaccctggtgaacaaattatgatgcatttca 880

                                                                        
Query: 506  gtgtgtcaaaatcgaaatgtctaaccatggacgcataagtggctctgtaaaatttctcta 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  gtgtgtcaaaatcgaaatgtctaaccatggacgcataagtggctctgtaaaatttctcta 820

                                                                        
Query: 566  ccttgtcatcaaacttcattatatctgtacctctcttcttctttggaatgctatattcga 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819  ccttgtcatcaaacttcattatatctgtacctctcttcttctttggaatgctatattcga 760

                                                                        
Query: 626  tcttatgctttaataccggagagaatgaattgatcaagcaaatgtgggaaataccttctt 685
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  tcttatgctttaataccgtagagaatgaattgatcaagcaaatgtgggaaataccttctt 700

                                                                        
Query: 686  gtaagacaacagctgccatatcagaacgaccct-tatattacaagctttgtttaccagat 744
            |||||||||||||||||||||||||||||||||  |||||||||||||  ||||| ||||
Sbjct: 699  gtaagacaacagctgccatatcagaacgaccctcaatattacaagcttgttttacgagat 640

                                                                        
Query: 745  tatccccgtatgaatttgtatcatttttgaacaatgtgaagggggaaaaaaaatatgtgg 804
            ||||| ||||||||||   ||||| ||||| ||||||||| ||| || | ||||  |  |
Sbjct: 639  tatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaagagaaat-cgatg 581

                                                 
Query: 805  gggaaactggaaaaatttaccccctggcaaatcctgg 841
            | |||||| ||| ||||||||| ||||||||||||||
Sbjct: 580  gtgaaact-gaagaatttacccactggcaaatcctgg 545


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7826
Number of Sequences: 1807
Number of extensions: 7826
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)