BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG08RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1116 0.0
>3x_Contig1708
Length = 19451
Score = 1116 bits (563), Expect = 0.0
Identities = 651/675 (96%), Gaps = 4/675 (0%)
Strand = Plus / Plus
Query: 49 caaacattctatcatttaaaact-agcactcatgtccactttgaattgggaagatgtttg 107
|||||||| |||||||| ||| | || | ||| ||||| |||||||||||||||||||||
Sbjct: 10065 caaacattttatcatttcaaaatcagaaatcaagtccagtttgaattgggaagatgtttg 10124
Query: 108 atccaaaaaattatgagcaacaaatgtgagaagtctttcaaaaagttcgcttcttatttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10125 atccaaaaaattatgagcaacaaatgtgagaagtctttcaaaaagttcgcttcttatttt 10184
Query: 168 taagtgtttcatggggttgttagcaacaggcggtatgtggtttgataatgcatatttaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10185 taagtgtttcatggggttgttagcaacaggcggtatgtggtttgataatgcatatttaat 10244
Query: 228 ctcatcactggacatttgaatatctgtttcaatttcttgtggttgtagatctagattgtc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10245 ctcatcactggacatttgaatatctgtttcaatttcttgtggttgtagatctagattgtc 10304
Query: 288 aggtaagttgaagtctagtaatgaatccgttgattgtcctccaaaatagacgtattgatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10305 aggtaagttgaagtctagtaatgaatccgttgattgtcctccaaaatagacgtattgatc 10364
Query: 348 cacatgagactttatgaatctaatttcttggaagtcagagttttcgtatttttcaaaagt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10365 cacatgagactttatgaatctaatttcttggaagtcagagttttcgtatttttcaaaagt 10424
Query: 408 ctccaactttaacgcacatgttcttccatcagtaatgtataaggaacttgaattacaatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10425 ctccaactttaacgcacatgttcttccatcagtaatgtataaggaacttgaattacaatc 10484
Query: 468 gtacccaagaactttcatatctttgttaaaccgtataatgtcctcccatttccttttaaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10485 gtacccaagaactttcatatctttgttaaaccgtataatgtcctcccatttccttttaaa 10544
Query: 528 tggataattagagtccaatttggaacttgtttgagttacgacagcagcatcagagaataa 587
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10545 tggataattagagtccaatttggaacttgtttgagttaggacagcagcatcagagaataa 10604
Query: 588 agtgttaacagacgttatcggtaaatgtttcttggtgtatgcagttgggactataattct 647
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 10605 agtgtaaacagacgttatcggtaaatgttccttggtgtatgcagttgggactataagtct 10664
Query: 648 tggggcaaaattctcttgatatggcccgcgtgtatgtgtttaattcttgaagt-gagaag 706
|||||| |||||| ||||| | ||||||||||||||||| ||| |||| ||||||
Sbjct: 10665 tggggc-aaattcatctgataatggtcgcgtgtatgtgtttaa-tctgtaagtagagaag 10722
Query: 707 atagcgaaactgtta 721
|||||||||||||||
Sbjct: 10723 atagcgaaactgtta 10737
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8630
Number of Sequences: 1807
Number of extensions: 8630
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)