BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG09FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1536 1360 0.0
>3x_Contig1536
Length = 11572
Score = 1360 bits (686), Expect = 0.0
Identities = 741/757 (97%), Gaps = 2/757 (0%)
Strand = Plus / Plus
Query: 91 gattcaatcaattgtcttgaacaattgagggtctctgaaaattggtaagaaatcttcgaa 150
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8978 gattcaatcaatt-tcttgaacaattgagggtctctgaaaattggtaagaaatcttcgaa 9036
Query: 151 taggataccctcttgtgggaagtttgggtactgacgcaaagcacctttcaactcagtagc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9037 taggataccctcttgtgggaagtttgggtactgacgcaaagcacctttcaactcagtagc 9096
Query: 211 atattcagtgatagacatcttccacttgatattcttatgacaagtgcaataggttcttct 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9097 atattcagtgatagacatcttccacttgatattcttatgacaagtgcaataggttcttct 9156
Query: 271 tcaatattgaaagtgaaacaccccctatacaagtactgtacaatgaaataattaataaca 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9157 tcaatattgaaagtgaaacaccccctatacaagtactgtacaatgaaataattaataaca 9216
Query: 331 ctgaataagagattacatatgaatcagttgccagtagttcctcatctttgatcctatgtg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9217 ctgaataagagattacatatgaatcagttgccagtagttcctcatctttgatcctatgtg 9276
Query: 391 atgagcttcataaaaagtttttgaattttcggtattaattcagtctagcaaaatttcact 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9277 atgagcttcataaaaagtttttgaattttcggtattaattcagtctagcaaaatttcact 9336
Query: 451 ctgtacatgtgccaaagaaaatgaaaacatacgacagcgctactcataaatgctgcaaag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9337 ctgtacatgtgccaaagaaaatgaaaacatacgacagcgctactcataaatgctgcaaag 9396
Query: 511 aaaacggagattctggtcaattgctgagtataggatagtatatagtgtggttctgtacca 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9397 aaaacggagattctggtcaattgctgagtataggatagtatatagtgtggttctgtacca 9456
Query: 571 gtgactactatggcatctcagagccataagtacgatttgggacgaaatgaattgaacaag 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9457 gtgactactatggcatctcagagccataagtacgatttgggacgaaatgaattgaacaag 9516
Query: 631 cctgattactacgttgagttgacagagaagcatttgtctgactttgaaatatggaactct 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9517 cctgattactacgttgagttgacagagaagcatttgtctgactttgaaatatggaactct 9576
Query: 691 ctttgcttgaatgagagttatgatatgctcctttacctttgtgagcattatctgaatatg 750
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9577 ctttgctcgaatgagagttatgatatgctcctttacctttgtgagcaatatctgaatatg 9636
Query: 751 gttcggtttcctgttattcccagcggagaaattgctgtacttttcacgntaacttccatc 810
| |||||||||||||||||| || | | ||||||||||||||||||| || ||||||||
Sbjct: 9637 ggtcggtttcctgttattccaagtgaggtaattgctgtacttttcacgttagcttccatc 9696
Query: 811 ggagaacaccataaagggttcccttataaaaaaggca 847
||||| ||| || |||||||| || ||||||||||||
Sbjct: 9697 ggagatcacaat-aagggttcgctaataaaaaaggca 9732
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7643
Number of Sequences: 1807
Number of extensions: 7643
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)