BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1168 0.0
>3x_Contig1448
Length = 10333
Score = 1168 bits (589), Expect = 0.0
Identities = 607/613 (99%)
Strand = Plus / Plus
Query: 82 actttctaaccgactaagggaataataaggggtctttttcctttactaattcagaagtca 141
||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct: 9721 actttctaaccaactaaatgaataataagggcttcttttcctttactaattcagaagtca 9780
Query: 142 gatcaaatcaaaataagcacagtatttcccacggaccgaaattaaaatcctgatctattt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9781 gatcaaatcaaaataagcacagtatttcccacggaccgaaattaaaatcctgatctattt 9840
Query: 202 tcctttattaacgctttttcaccgacagacgtgaggttaggttattctttgtttaaaatt 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9841 tcctttattaacgctttttcaccgacagacgtgaggttaggttattctttgtttaaaatt 9900
Query: 262 tgataagcccttcgcccatttgccagctagccaattatttgccagttatccctcttcttc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9901 tgataagcccttcgcccatttgccagctagccaattatttgccagttatccctcttcttc 9960
Query: 322 tgcttcccttgataaatgtctgttccttacagatcaaagtctattttaaaacatcatcca 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9961 tgcttcccttgataaatgtctgttccttacagatcaaagtctattttaaaacatcatcca 10020
Query: 382 ccggtttctcatcctctgaatttcatgatttcttcagttctgaatttctcgattcgacca 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10021 ccggtttctcatcctctgaatttcatgatttcttcagttctgaatttctcgattcgacca 10080
Query: 442 tgcgaagtttctttagagcttcattcctgacacgaaccgaaaaagaaagaaagaaaaaaa 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10081 tgcgaagtttctttagagcttcattcctgacacgaaccgaaaaagaaagaaagaaaaaaa 10140
Query: 502 aaaaaaaaggacgcgaacaaacattatcgtggaagactgtactgagaaagtggtgcttgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10141 aaaaaaaaggacgcgaacaaacattatcgtggaagactgtactgagaaagtggtgcttgg 10200
Query: 562 ctgcaactggacttaatactatgggaagtaaagaactaaaatgtttctagttgttattca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10201 ctgcaactggacttaatactatgggaagtaaagaactaaaatgtttctagttgttattca 10260
Query: 622 ttcccttattgtcttaaatatgagtttgcctgaataacaggaagcatagccaagctcttg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10261 ttcccttattgtcttaaatatgagtttgcctgaataacaggaagcatagccaagctcttg 10320
Query: 682 ttcttattcgaca 694
|||||||||||||
Sbjct: 10321 ttcttattcgaca 10333
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,368
Number of Sequences: 1807
Number of extensions: 17368
Number of successful extensions: 2462
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)