BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG10FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1390 0.0
>3x_Contig1173
Length = 7454
Score = 1390 bits (701), Expect = 0.0
Identities = 746/757 (98%), Gaps = 3/757 (0%)
Strand = Plus / Minus
Query: 89 gaatgccactaaaactaccacaataacaacatactatcttgcaatcgtgcagaatcaatg 148
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3937 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 3878
Query: 149 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3877 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 3818
Query: 209 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 3758
Query: 269 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 3698
Query: 329 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 3638
Query: 389 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 3578
Query: 449 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttcc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttcc 3518
Query: 509 ttttctcatgcgtttgccagatctgcaggtcatttattctcatatgagttccacgaagta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 ttttctcatgcgtttgccagatctgcaggtcatttattctcatatgagttccacgaagta 3458
Query: 569 agatacgaacaagcgaagcaggaatttaaagaacatggactattggaagctggaaacact 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3457 agatacgaacaagcgaagcaggaatttaaagaacatggactattggaagctggaaacact 3398
Query: 629 accataacgcatagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccaca 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 accataacgcatagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccaca 3338
Query: 689 tcgcatgaattcagaggtccagaggaaacgaaggtggagttgaatgctgactgcatattt 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3337 tcgcatgaattcagaggtccagaggaaacgaaggtggagttgaatgctgactgcatattt 3278
Query: 749 ttagatcttccagcaccatgggatgccatacccaatttgactttcgtttttttaaaggga 808
||||||||||||||||||||||||||||||||||||||||||| |||| | | ||| |||
Sbjct: 3277 ttagatcttccagcaccatgggatgccatacccaatttgacttccgttatctcaaa-gga 3219
Query: 809 aaagaa-gtaaatctcttgctgcttcttcccaagcat 844
|||||| ||||||||| |||||||||| |||| ||||
Sbjct: 3218 aaagaaggtaaatctc-tgctgcttctccccatgcat 3183
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6103
Number of Sequences: 1807
Number of extensions: 6103
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)