BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZG10RM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1335                                                        1255   0.0  

>3x_Contig1335 
          Length = 8696

 Score = 1255 bits (633), Expect = 0.0
 Identities = 726/753 (96%), Gaps = 3/753 (0%)
 Strand = Plus / Minus

                                                                        
Query: 88   tgagtcctgttccaaaggaacggtatattatcatatcgacctcgaaagtatctaaggaat 147
            |||||| |||||| || ||| ||||||||   |||||||  ||||||||||||| |||||
Sbjct: 1262 tgagtcttgttccgaaagaagggtatatttcaatatcgatatcgaaagtatctagggaat 1203

                                                                        
Query: 148  ctatctggaatacaatgtctttttcatcctcttcttgaataggcaaaataatatttcttg 207
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1202 ctatctggaatacaatgtctttttcgtcctcttcttgaataggcaaaataatatttcttg 1143

                                                                        
Query: 208  gaatgatattcgatacactacaagtaagagtgatgcgtccaggtgaggataacatcattt 267
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 gaatgatattcgatacactagaagtaagagtgatgcgtccaggtgaggataacatcattt 1083

                                                                        
Query: 268  cgtcgtccttgttgagcgtgattgattcctttcctggcttgaaagagagttttacaaaaa 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 cgtcgtccttgttgagcgtgattgattcctttcctggcttgaaagagagttttacaaaaa 1023

                                                                        
Query: 328  tctttctttccaaaaaattgtgaccatactttcttagagggataattggtggtggtaagg 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tctttctttccaaaaaattgtgaccatactttcttagagggataattggtggtggtaagg 963

                                                                        
Query: 388  tgaaatctggaatatcctttaatgaatcattcagggacagttgatcgtcagaaaaaagtt 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  tgaaatctggaatatcctttaatgaatcattcagggacagttgatcgtcagaaaaaagtt 903

                                                                        
Query: 448  ccccgggatctgatggtctcaaacttccagcgagtggtctatctgggaaggcgctataac 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  ccccgggatctgatggtctcaaacttccagcgagtggtctatctgggaaggcgctataac 843

                                                                        
Query: 508  gtttgcggtttccagcatagcttaaaagtacattcaatacagaaagatgtccttcccata 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  gtttgcggtttccagcatagcttaaaagtacattcaatacagaaagatgtccttcccata 783

                                                                        
Query: 568  atgcatagaaaacttgcgagag-gttttgttgatctttcatgaacacgtctgcacctagt 626
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 782  atgcatagaaaacttgcgagagtgttttgttgatctttcatgaacacgtctgcacctagt 723

                                                                        
Query: 627  tctaataatacttggacggtggtggcgtgtccttcttgaattgcgtagaaaattggtggc 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  tctaataatacttggacggtggtggcgtgtccttcttgaattgcgtagaaaattggtggc 663

                                                                        
Query: 687  catttgttgaaaccatcaatctcatctggattcgcaccataagaaaccaaaagttttatc 746
            ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 662  catttgttgaacccatcaatctcatctggatccgcaccataagaaaccaaaagttttatc 603

                                                                        
Query: 747  aattctgatccaccgcccattgtttccaccaaattgcataagacttaaaccttgggaaat 806
            ||||||||||||||||||||| || ||| |||  |||| | ||| ||||||||||| |||
Sbjct: 602  aattctgatccaccgcccatttttgcca-caatatgcaaaggacataaaccttggg-aat 545

                                             
Query: 807  cttttaatctaaaaaaatttatgtcaccctttt 839
            || |||||||| | |||||||||||||||||||
Sbjct: 544  ctcttaatctagataaatttatgtcaccctttt 512


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7392
Number of Sequences: 1807
Number of extensions: 7392
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)