BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG11FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1346 0.0
>3x_Contig1541
Length = 10565
Score = 1346 bits (679), Expect = 0.0
Identities = 764/787 (97%), Gaps = 4/787 (0%)
Strand = Plus / Minus
Query: 88 cggaggtgagcgaggagtgtggtgagtggaaggggtcctgatgcgaatagctccaagctt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 cggaggtgagcgaggagtgtggtgagtggaaggggtcctgatgcgaatagctccaagctt 1530
Query: 148 tttttttttttttcactgtccattctttgtccttttcaaggattgtctgtccttcgagta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 tttttttttttttcactgtccattctttgtccttttcaaggattgtctgtccttcgagta 1470
Query: 208 attcgacctctttgagatcatgcgtcacgcatctctttgaatcctatatttttattatgt 267
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 attcgacctcaatgagatcatgcgtcacgcatctctttgaatcctatatttttattatgt 1410
Query: 268 ctctttcttttaaccaattgcaggatgttgaaattataggatatcatcttgacctgggtt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ctctttcttttaaccaattgcaggatgttgaaattataggatatcatcttgacctgggtt 1350
Query: 328 acagttctcataattcaagaacttcaagatgtgccacaaagcggcagacatgatggcacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 acagttctcataattcaagaacttcaagatgtgccacaaagcggcagacatgatggcacc 1290
Query: 388 aagacctggaccaatccagtaaatccaatggtagttagggaaagaggcagcagcgataca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 aagacctggaccaatccagtaaatccaatggtagttagggaaagaggcagcagcgataca 1230
Query: 448 tggaccgaaagatctggctgggttcaaaccggcaccggtgtagtaaacacagatcaagtg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tggaccgaaagatctggctgggttcaaaccggcaccggtgtagtaaacacagatcaagtg 1170
Query: 508 accaacaaacaatgcaataccaatggcgaatggagccattggggtagccttatgcttttc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 accaacaaacaatgcaataccaatggcgaatggagccattggggtagccttatgcttttc 1110
Query: 568 aacggccatgaacaaaacggtggtacataggattgcggtaccgaaggcttccaagaaaac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 aacggccatgaacaaaacggtggtacataggattgcggtaccgaaggcttccaagaaaac 1050
Query: 628 acctcttgatctggaagcaccaccacctagaccgttagcgaataagatttcacctggggt 687
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 acctctggatctggaagcaccaccacctagaccgttagcgaataagatttcacctggggt 990
Query: 688 catggcagaagcagcacctgcagcagccataccggcaaccttttgactgatcc-catgac 746
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 989 catggcagaagcagcacctgcagcagccataccggcaaccatttgactgatccacatgac 930
Query: 747 aagagctctt-gcactgggatgacgtttgtgcagaccaaagtcaaagt-acagttgggtt 804
|||||||||| || ||||||||||||||| |||||||||||||||| |||| ||||||
Sbjct: 929 aagagctcttggccatgggatgacgtttgtcaagaccaaagtcaaagtaacagctgggtt 870
Query: 805 caaattacc-ccataaacttttaaaaaaatgaaaacggctaacttgacggaaaacccgaa 863
||||||||| ||| | ||| | || || ||||||||||| ||| ||||||| || |||||
Sbjct: 869 caaattaccaccagagactctgaagaagatgaaaacggcaaacatgacggagaaaccgaa 810
Query: 864 acccaaa 870
|||||||
Sbjct: 809 acccaaa 803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,036
Number of Sequences: 1807
Number of extensions: 15036
Number of successful extensions: 2234
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)