BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1292 0.0
>3x_Contig1771
Length = 25932
Score = 1292 bits (652), Expect = 0.0
Identities = 690/700 (98%), Gaps = 2/700 (0%)
Strand = Plus / Plus
Query: 49 tgtatagacattaaaaaattca-ggtttaatcaatgtaaaagaagcgcttgggttgtggc 107
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 18857 tgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggc 18916
Query: 108 aaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18917 aaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagttt 18976
Query: 168 cttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacatacaaaac 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18977 cttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaac 19036
Query: 228 agaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19037 agaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaac 19096
Query: 288 aaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19097 aaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttg 19156
Query: 348 tatattaaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19157 tatattaaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttct 19216
Query: 408 ttttttttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19217 ttttttttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaata 19276
Query: 468 ataatatcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19277 ataatatcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataa 19336
Query: 528 gggggtgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttcttt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 19337 gggggtgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttc-tt 19395
Query: 588 ttttttgctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctct 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19396 ttttttgctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctct 19455
Query: 648 tggagcagcctctgagacttctttgacaccgtaaccggtcttggcagaacattcgatgta 707
|| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 19456 tgtagcagcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgta 19515
Query: 708 gtcaacagcaccgattgggccagcgacttcttgtgcttga 747
|||||||||||||||| || ||||||||||||||||||||
Sbjct: 19516 gtcaacagcaccgatttggtcagcgacttcttgtgcttga 19555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,914
Number of Sequences: 1807
Number of extensions: 10914
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)