BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG12FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1495 0.0
>3x_Contig1734
Length = 17938
Score = 1495 bits (754), Expect = 0.0
Identities = 817/832 (98%), Gaps = 5/832 (0%)
Strand = Plus / Plus
Query: 88 caacatcaaccagaagggtgctgcttcattgtcctgtcttatcttccctgtaccacctta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13910 caacatcaaccagaagggtgctgcttcattgtcctgtcttatcttccctgtaccacctta 13969
Query: 148 ttctgtctttcgacacatttatcgaaaagcagtcaaatcaatgaaactgaaaatttttga 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13970 ttctgtctttcgacacatttatcgaaaagcagtcaaatcaatgaaactgaaaatttttga 14029
Query: 208 agcgtgatatctttctgnttattgaacgatgactaacattcgaagaaatggcgacagatt 267
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14030 agcgtgatatctttctgtatattgaacgatgactaacattcgaagaaatggcgacagatt 14089
Query: 268 taccactaagagggccactgatacactaagacccatcagcctagctatggcatcatctca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14090 taccactaagagggccactgatacactaagacccatcagcctagctatggcatcatctca 14149
Query: 328 tatttcttttgaccagtccaaaggtcacacttccgctttacagttggccaacaatatcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14150 tatttcttttgaccagtccaaaggtcacacttccgctttacagttggccaacaatatcaa 14209
Query: 388 attagcttatgctcttctatcatctggaaatttgaaattggaagagaacaaggatgttct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14210 attagcttatgctcttctatcatctggaaatttgaaattggaagagaacaaggatgttct 14269
Query: 448 catcccacagttggtcattgattccactgggttccgtttattcgatgctaatgctatctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14270 catcccacagttggtcattgattccactgggttccgtttattcgatgctaatgctatctt 14329
Query: 508 gagatatgttttgaacgattttgaagaggaagaatctaacgagtacaatttcgctgtatc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14330 gagatatgttttgaacgattttgaagaggaagaatctaacgagtacaatttcgctgtatc 14389
Query: 568 ttctttggaagcattcgcttcgcataaagatccgatcaaagaacatcttgctgaagcggt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14390 ttctttggaagcattcgcttcgcataaagatccgatcaaagaacatcttgctgaagcggt 14449
Query: 628 gcagaaatcgttggataattatttaacaagcgtcgaggaacctttgtctgccactagaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14450 gcagaaatcgttggataattatttaacaagcgtcgaggaacctttgtctgccactagaat 14509
Query: 688 tgttatttttgcaaacacatacgctttagaccctgctgctgttgaggcgagaatcacttt 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14510 tgttatttttgcaaacacatacgctttagaccctgctgctgttgaggcgagaatcacttc 14569
Query: 748 tttgccggagagactacaag-agcttttaaattggccaagacgaagatcgtccgttcttt 806
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 14570 tttgccggagagactacaagaagctttgaaattggccaagacgaagatcgtccgttcttc 14629
Query: 807 cactgattat-agcacacaggtgcggtaaatgtgtcacaagagcatttgatgaaatctca 865
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 14630 aactgattataagcacacaggtgcggtaaatgtgtcacaagagcatttgatgaagtctca 14689
Query: 866 ggatgctgtaaattttggcaaagggagggaaaacggnaatattttgattacg 917
|||||||| |||||||| |||| ||||||| ||| | |||||||||||||||
Sbjct: 14690 ggatgctg-aaattttgccaaa-ggagggagaac-gtaatattttgattacg 14738
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7331
Number of Sequences: 1807
Number of extensions: 7331
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)