BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZG12RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 940 0.0
3x_Contig1347 464 e-130
>3x_Contig1734
Length = 17938
Score = 940 bits (474), Expect = 0.0
Identities = 512/522 (98%), Gaps = 2/522 (0%)
Strand = Plus / Minus
Query: 333 ttcactactttcaaaactacaaaaagagaccattacaacaaagcaagagaaaacatggaa 392
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17928 ttcaatactttcaaaactacaaaaagagaccattacaacaaagcaagagaaaacatggaa 17869
Query: 393 gtcttgaaacttagcgttcaagatccaagaccaaaatctgaagtgttggtgtataatgac 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17868 gtcttgaaacttagcgttcaagatccaagaccaaaatctgaagtgttggtgtataatgac 17809
Query: 453 ttgtatcagttgatggaggggtccatcacaaatgtcgctgtaaaatcgaagccaactgaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17808 ttgtatcagttgatggaggggtccatcacaaatgtcgctgtaaaatcgaagccaactgaa 17749
Query: 513 aactcaaacgccttcagatacactacgccgtacttatcatcgggatgtctatgcggcgtc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17748 aactcaaacgccttcagatacactacgccgtacttatcatcgggatgtctatgcggcgtc 17689
Query: 573 accaggtatttcttgctcaggaaaggtttgttgcaagaggactccatagatgtaagagat 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17688 accaggtatttcttgctcaggaaaggtttgttgcaagaggactccatagatgtaagagat 17629
Query: 633 ctgtctgtgggtgatgagatcttgctgttcaatggtatcatcggttgtgttaaaggtgtc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17628 ctgtctgtgggtgatgagatcttgctgttcaatggtatcatcggttgtgttaaaggtgtc 17569
Query: 693 attagaaactctgtggatttttcgaatacctaaattcaaatgtgaatctatatgaacttt 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17568 attagaaactctgtggatttttcgaatacctaaattcaaatgtgaatctatatgaacttt 17509
Query: 753 acgtaaacttgtaacatatttattcgatcatacttctctttttaccacgttaacctaacc 812
||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct: 17508 acgtaaacttgtaacatatttatccgatcatacttctctttctaccacg-taacctaacc 17450
Query: 813 tctttcaaccttttaattaaaatctttatactttcccagccc 854
|||| |||||| ||||| |||||||||||||| || |||||
Sbjct: 17449 tcttcaaaccttctaatt-aaatctttatacttcccaagccc 17409
>3x_Contig1347
Length = 6130
Score = 464 bits (234), Expect = e-130
Identities = 251/254 (98%), Gaps = 2/254 (0%)
Strand = Plus / Plus
Query: 53 gatgctcttgacccaattgattcattctttaccgattcaagagtctttgtccattgagga 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5864 gatgctcttgacccaattgattcattctttaccgattcaagagtctttgtccattgagga 5923
Query: 113 taagatgaaagcacttttgtcggcaagtactccatataagatgagggtcctggtgaataa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5924 taagatgaaagcacttttgtcggcaagtactccatataagatgagggtcctggtgaataa 5983
Query: 173 agatggtaccatgaagatcgaggcacatgaactgccgcaatttctcacaacatgtccctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5984 agatggtaccatgaagatcgaggcacatgaactgccgcaatttctcacaacatgtccctc 6043
Query: 233 tactcatgaatatttagtg-caaaacttactttcagggtatctggaccatgcacctactt 291
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6044 tactcatgaatatttagtgtcaaaactaactttcagggtatctggaccatgcacctactt 6103
Query: 292 gggacgtgtatatc 305
|||||||||||||
Sbjct: 6104 -ggacgtgtatatc 6116
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7200
Number of Sequences: 1807
Number of extensions: 7200
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)