BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 965 0.0
>3x_Contig1768
Length = 25668
Score = 965 bits (487), Expect = 0.0
Identities = 544/555 (98%), Gaps = 6/555 (1%)
Strand = Plus / Minus
Query: 89 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24677 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 24618
Query: 149 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24617 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 24558
Query: 209 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24557 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 24498
Query: 269 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24497 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 24438
Query: 329 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24437 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 24378
Query: 389 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24377 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 24318
Query: 449 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24317 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 24258
Query: 509 gtaatttaattgggtcctttttcttctttctgtgggctatctttccaagta-taatcctg 567
|||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 24257 gtaatttaattgggtcttttttcttctttctgtgtgctatcttt-caagtattaatcctg 24199
Query: 568 aatggttttaagggttttgttaattcaatattattaggtattttggattttgaagggaaa 627
||||||||||| ||||||||||||||||||||| |||||||||| ||| ||||| |||||
Sbjct: 24198 aatggttttaa-ggttttgttaattcaatatta-taggtatttt-gatattgaa-ggaaa 24143
Query: 628 tccttttccaatggg 642
|||||| | ||||||
Sbjct: 24142 tcctttccaaatggg 24128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,137
Number of Sequences: 1807
Number of extensions: 15137
Number of successful extensions: 277
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)