BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH02FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1366 0.0
>3x_Contig1173
Length = 7454
Score = 1366 bits (689), Expect = 0.0
Identities = 723/733 (98%), Gaps = 1/733 (0%)
Strand = Plus / Minus
Query: 84 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3937 gaatgccagtaaaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatg 3878
Query: 144 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3877 tcacaattttttgaatataaagacactataaaagagggtgatttggtgcttgcatggttg 3818
Query: 204 tccagggacaattttaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 263
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3817 tccagggacaatttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttat 3758
Query: 264 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3757 ggtgctttctcacattcagatatgattggaaaaccatttggttctcaaattgctattaga 3698
Query: 324 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3697 acgaagggaagtaatagatttggtttcattcacgttctgcagccgaccccggaactatgg 3638
Query: 384 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3637 tctatctctttacctcacagaacccagattgtttatacaccagattcctcctatatcatg 3578
Query: 444 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttcc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3577 cagcggatggagtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttcc 3518
Query: 504 ttttctcatgcgtttgccagatctgcaggtcatttattctcatatgagttccacgaagta 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3517 ttttctcatgcgtttgccagatctgcaggtcatttattctcatatgagttccacgaagta 3458
Query: 564 agatacgaacaagcgaagcaggaatttaaagaacatggactattggaagctggaaacact 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3457 agatacgaacaagcgaagcaggaatttaaagaacatggactattggaagctggaaacact 3398
Query: 624 accataacgcatagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccaca 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397 accataacgcatagagatgtttgtaaagatggatttgaaattaaaaacggtgacaccaca 3338
Query: 684 tcgcatgaattcagaggtccagaggaaacgaaggttgagttgaatgctgactgcatattt 743
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3337 tcgcatgaattcagaggtccagaggaaacgaaggtggagttgaatgctgactgcatattt 3278
Query: 744 ttagatctttcagcaccatgggaatgccatacccaatttaccttccgttatttaaaagga 803
||||||||| |||||||||||| |||||||||||||||| |||||||||| | ||||||
Sbjct: 3277 ttagatcttccagcaccatggg-atgccatacccaatttgacttccgttatctcaaagga 3219
Query: 804 aaaaaagttaaat 816
||| ||| |||||
Sbjct: 3218 aaagaaggtaaat 3206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6604
Number of Sequences: 1807
Number of extensions: 6604
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)