BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZH02RM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1335                                                        1336   0.0  

>3x_Contig1335 
          Length = 8696

 Score = 1336 bits (674), Expect = 0.0
 Identities = 769/789 (97%), Gaps = 10/789 (1%)
 Strand = Plus / Minus

                                                                        
Query: 54   ggaaaacatcaaaaagagcatatgttgcttgctatgagtcttgttccgaaagaagggtat 113
            ||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 1295 ggaaaacatcagaaagagcatatgttt-ttgctatgagtcttgttccgaaagaagggtat 1237

                                                                        
Query: 114  atttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtctttttcg 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1236 atttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtctttttcg 1177

                                                                        
Query: 174  tcctcttcttgaataggcaaaataatatttcttggaatgatattctattcatctagaagt 233
            ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 1176 tcctcttcttgaataggcaaaataatatttcttggaatgatattcgataca-ctagaagt 1118

                                                                        
Query: 234  aagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattga 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 aagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattga 1058

                                                                        
Query: 294  ttcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgacc 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 ttcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgacc 998

                                                                        
Query: 354  atactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatga 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  atactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatga 938

                                                                        
Query: 414  atcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaact 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  atcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaact 878

                                                                        
Query: 474  tccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagcttaa 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  tccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagcttaa 818

                                                                        
Query: 534  aagtacattcaatacagaaagatgtccttcccataatgcatagaaaacttgcgagag-gt 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 817  aagtacattcaatacagaaagatgtccttcccataatgcatagaaaacttgcgagagtgt 758

                                                                        
Query: 593  tttgttgatctttcatgaacacgtctgcacctagttctaataatacttggacggtggtgg 652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  tttgttgatctttcatgaacacgtctgcacctagttctaataatacttggacggtggtgg 698

                                                                        
Query: 653  cgtgtccttcttgaattgcgtagaaaattggtggccattttgttgaacccatcaatctca 712
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 697  cgtgtccttcttgaattgcgtagaaaattggtggcca-tttgttgaacccatcaatctca 639

                                                                        
Query: 713  tctggatccgcaccattagaaacccaaaggtttatcaattctgatccaccggccattttt 772
            |||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct: 638  tctggatccgcaccataagaaaccaaaagttttatcaattctgatccaccgcccattttt 579

                                                                        
Query: 773  gccacaatatngccaaggacattaaaccttgtgggaatctcttaatcctagataaaattt 832
            |||||||||| || ||||||| |||||||  ||||||||||||||| |||||| ||||||
Sbjct: 578  gccacaatat-gcaaaggaca-taaacct--tgggaatctcttaat-ctagat-aaattt 525

                     
Query: 833  atggcaccc 841
            ||| |||||
Sbjct: 524  atgtcaccc 516


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7118
Number of Sequences: 1807
Number of extensions: 7118
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)