BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC49ZH02RM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1335 1336 0.0 >3x_Contig1335 Length = 8696 Score = 1336 bits (674), Expect = 0.0 Identities = 769/789 (97%), Gaps = 10/789 (1%) Strand = Plus / Minus Query: 54 ggaaaacatcaaaaagagcatatgttgcttgctatgagtcttgttccgaaagaagggtat 113 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1295 ggaaaacatcagaaagagcatatgttt-ttgctatgagtcttgttccgaaagaagggtat 1237 Query: 114 atttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtctttttcg 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1236 atttcaatatcgatatcgaaagtatctagggaatctatctggaatacaatgtctttttcg 1177 Query: 174 tcctcttcttgaataggcaaaataatatttcttggaatgatattctattcatctagaagt 233 ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct: 1176 tcctcttcttgaataggcaaaataatatttcttggaatgatattcgataca-ctagaagt 1118 Query: 234 aagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattga 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 aagagtgatgcgtccaggtgaggataacatcatttcgtcgtccttgttgagcgtgattga 1058 Query: 294 ttcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgacc 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 ttcctttcctggcttgaaagagagttttacaaaaatctttctttccaaaaaattgtgacc 998 Query: 354 atactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatga 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 997 atactttcttagagggataattggtggtggtaaggtgaaatctggaatatcctttaatga 938 Query: 414 atcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaact 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 937 atcattcagggacagttgatcgtcagaaaaaagttccccgggatctgatggtctcaaact 878 Query: 474 tccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagcttaa 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 877 tccagcgagtggtctatctgggaaggcgctataacgtttgcggtttccagcatagcttaa 818 Query: 534 aagtacattcaatacagaaagatgtccttcccataatgcatagaaaacttgcgagag-gt 592 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 817 aagtacattcaatacagaaagatgtccttcccataatgcatagaaaacttgcgagagtgt 758 Query: 593 tttgttgatctttcatgaacacgtctgcacctagttctaataatacttggacggtggtgg 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 tttgttgatctttcatgaacacgtctgcacctagttctaataatacttggacggtggtgg 698 Query: 653 cgtgtccttcttgaattgcgtagaaaattggtggccattttgttgaacccatcaatctca 712 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 697 cgtgtccttcttgaattgcgtagaaaattggtggcca-tttgttgaacccatcaatctca 639 Query: 713 tctggatccgcaccattagaaacccaaaggtttatcaattctgatccaccggccattttt 772 |||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||| Sbjct: 638 tctggatccgcaccataagaaaccaaaagttttatcaattctgatccaccgcccattttt 579 Query: 773 gccacaatatngccaaggacattaaaccttgtgggaatctcttaatcctagataaaattt 832 |||||||||| || ||||||| ||||||| ||||||||||||||| |||||| |||||| Sbjct: 578 gccacaatat-gcaaaggaca-taaacct--tgggaatctcttaat-ctagat-aaattt 525 Query: 833 atggcaccc 841 ||| ||||| Sbjct: 524 atgtcaccc 516 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7118 Number of Sequences: 1807 Number of extensions: 7118 Number of successful extensions: 58 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)