BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH03FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 759 0.0
>3x_Contig343
Length = 1398
Score = 759 bits (383), Expect = 0.0
Identities = 496/527 (94%), Gaps = 5/527 (0%)
Strand = Plus / Plus
Query: 373 ttggcaaacatatattgtcaataaattatcctggcgtttctaac-ttatacataaatcta 431
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 ttggcaaacatatattgtcaataaattatcctggcgtttctaaccttatacataaatcta 60
Query: 432 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgattcacaattcattatatagaatttatgatttgaataaaaacgttacctttcttgaa 120
Query: 492 tccgattttccagagaataccaacactatgttcaagtactcatcctaaccgagcaggtag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccgattttccagagaataccaacactatgttcaagtactcatcctaaccgagcaggtag 180
Query: 552 tagtgaagatctacatactttcatcagcgttcatttttgtattcaggatatcggtttctt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tagtgaagatctacatactttcatcagcgttcatttttgtattcaggatatcggtttctt 240
Query: 612 gtgtttcctgcatgatccatttccatatattttcgaaacaaaggattatttgtattaaag 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 gtgtttcctgcatgatccatttccatatattttcgaaacaaaggattatttgta-taaag 299
Query: 672 aaagaactttggcacg-atccttaacgatttaacaaaaacgacaacaaattacaatgacc 730
|||| | |||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 300 aaaggaacttggcacgaatcctaaacgattaaacaaaaacgacaacaaattacaatgacc 359
Query: 731 actggccgatcgtgcccgctggaaat-attatttttccagggaaaaccgggaaat-aatt 788
|||||||||||||||| |||||||| || |||||| || ||||||| | ||||| |||
Sbjct: 360 actggccgatcgtgccgcctggaaatcatcatttttacaaggaaaacggcgaaatcaata 419
Query: 789 ttattgtactagacagttgtctttgcaagaaaaaatgggacaacaaaccttcgcagaaaa 848
| || ||||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||
Sbjct: 420 tcatagtactagacagttgtctctgcaagaagaaatgggacaacaaaccttcgaagataa 479
Query: 849 ggaagaaattttttattcggcatattctggaaaaaaacccaccgtct 895
||||| ||| |||||||| ||||| || |||||||||||||||||
Sbjct: 480 tgaagagattatttattcgtcatatcttgtaaaaaaacccaccgtct 526
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8104
Number of Sequences: 1807
Number of extensions: 8104
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)