BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH03RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig272 1493 0.0
>3x_Contig272
Length = 1587
Score = 1493 bits (753), Expect = 0.0
Identities = 808/823 (98%), Gaps = 3/823 (0%)
Strand = Plus / Plus
Query: 70 ctttcatcaaacttggttctgaaccataaccatttagcagtgaatcagaatcattgctgt 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctttcatcaaacttggttctgaaccataaccatttagcagtgaatcagaatcattgctgt 708
Query: 130 ctccttcttttgagtgttgaatagacaactgggattctgacggaagactattaatagaac 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctccttcttttgagtgttgaatagacaactgggattctgacggaagactattaatagaac 768
Query: 190 ttggaggcatctcttctttatcttgacttccatttgattctggatgactgtctgatttgg 249
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 769 ttggaggcatctcttctttatcttgacttccaattgattctggatgactgtctgatttgg 828
Query: 250 accagttatcttcatctaccgcgtctttactgcctttgtcatctgaaattgcaacatcac 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 accagttatcttcatctaccgcgtctttactgcctttgtcatctgaaattgcaacatcac 888
Query: 310 cctgtattctagaaggaatttcagttgttgggtcaatcatttcgtcttgcaactccactg 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 cctgtattctagaaggaatttcagttgttgggtcaatcatttcgtcttgcaactccactg 948
Query: 370 atatttggctagtttctacttcagaagcagcattcttgaaaagttctacttcggtatcat 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 atatttggctagtttctacttcagaagcagcattcttgaaaagttctacttcggtatcat 1008
Query: 430 ctcctttaaggggttcttcctctgcactgactatcttgaaaggttccacttcaacatcag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ctcctttaaggggttcttcctctgcactgactatcttgaaaggttccacttcaacatcag 1068
Query: 490 ctcttttaaccgactctgcttcagaatcatctcccttaaaggattcttccccaacattca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 ctcttttaaccgactctgcttcagaatcatctcccttaaaggattcttccccaacattca 1128
Query: 550 caatctggacaggttcaacttcaaccttagctctcttaactgattctgctacagactcaa 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 caatctggacaggttcaacttcaaccttagctctcttaactgattctgctacagactcaa 1188
Query: 610 cttcactaaccgattctgctttcgcattatctgttttgttaatctccgtagcagattcag 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 cttcactaaccgattctgctttcgcattatctgttttgttaatctccgtagcagattcag 1248
Query: 670 ctagcttggccgattctatatcacttttaacagattctctgncatccgtatcttcatcgt 729
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1249 ctagcttggccgattctatatcacttttaacagattctctgtcatccgtatcttcatcgt 1308
Query: 730 ttacgtatgcggcaaaatagccagtcttcgatacctttaattctgcatcatcttcatcct 789
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1309 ttacgtatgcggcaaaatagccagtcttcgataccttcaattctgcatcatcttcatcct 1368
Query: 790 ctggatcactggcattgntaacgtccttatctttttgcgtcatcttttgagaaatttga- 848
|||||||||||| |||| ||||||||| ||||||| ||||||| |||||| ||||||
Sbjct: 1369 ctggatcactggtattgttaacgtcctcatcttttgcagtcatctcttgagatatttgat 1428
Query: 849 gcattaggagaat-tagatcatcattgacagaattatttcctg 890
|||||| |||||| |||||||||||||||||| ||||||||||
Sbjct: 1429 gcatta-gagaatctagatcatcattgacagatttatttcctg 1470
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6853
Number of Sequences: 1807
Number of extensions: 6853
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)