BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH04FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1054 1043 0.0
>3x_Contig1054
Length = 4453
Score = 1043 bits (526), Expect = 0.0
Identities = 607/630 (96%), Gaps = 3/630 (0%)
Strand = Plus / Minus
Query: 87 attatcctttaaggtcaaagataaaaatcaacacttgtggcacttgtgtttcttctcgtg 146
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2614 attatcctttaaggttaaagataaaaatcaacacttgtggcacttgtgtttcttctcgtg 2555
Query: 147 tctttgtaaattgctcttgacattgtagctcttgttacaatcaagatatgtacatttgaa 206
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554 tcttcgtaaattgctcttgacattgtagctcttgttacaatcaagatatgtacatttgaa 2495
Query: 207 cggtttcgcctgtgaatgcaccactatatgtgttttcaaagggcttggacgagagaattc 266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2494 cggtttcgcctgtgaatgcaccactatatgtgttttcaaagtgcttggacgagagaattc 2435
Query: 267 tttcccgcaaatgtggcatttcttacagtgtattttcttcttgtaacgagccccacgtcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2434 tttcccgcaaatgtggcatttcttacagtgtattttcttcttgtaacgagccccacgtcc 2375
Query: 327 ttgcttttggttccattcgaggatgtacccgggttctggtctatcgtgcagtagcttttc 386
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 ttgcttttggttccattcgtggatgtacccgggttctggtctatcgtgcagtagcttttc 2315
Query: 387 ttgcaattgttggaaatctaactcagacaatgaatctgcggaagagcatgaagagtctga 446
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2314 ttgcaattgtttgaaatctaactcagacaatgaatctgtggaagagcatgaagagtctga 2255
Query: 447 gtgggctctgggcctaaatattgcgtcacttgtgtctatcttattatcagctattacttt 506
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 2254 gtgggctctgggcctaaatattgcgtcacttgtgtctatcttattttcagcttttacttt 2195
Query: 507 ttactcatcggcaatggtcaacgggggacttatcgagagtttacttattgtaggtaacgt 566
|| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 2194 tttctcatcggcaatggtcaacgggggacttatcgagagtttagttattggaggtaacgt 2135
Query: 567 ccttggcgtatcatcgaaattgactgtgtttgtgtagtctactaagttacgaatggatgg 626
|||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct: 2134 ccttggtgtatcatcgaaattgtctgtgtctgtgtagtttactaagttacgaatggatgg 2075
Query: 627 aagaagctaaaattggttacaacttagagtcgctctgcctcgattttatgccattttact 686
||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||| ||
Sbjct: 2074 aagaagcgaaaattggttacaacttagtgtcgctctgcctcgattttctgcca-tttcct 2016
Query: 687 ttgggctcctggggtagttggtaaaatcat 716
||||||| || |||||| ||||||||||||
Sbjct: 2015 ttgggct-cttgggtag-tggtaaaatcat 1988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6259
Number of Sequences: 1807
Number of extensions: 6259
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)