BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH04RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1154 0.0
3x_Contig1482 186 5e-47
3x_Contig1658 174 2e-43
3x_Contig1765 167 5e-41
3x_Contig340 161 3e-39
>3x_Contig1769
Length = 25795
Score = 1154 bits (582), Expect = 0.0
Identities = 704/730 (96%), Gaps = 11/730 (1%)
Strand = Plus / Minus
Query: 72 atggattttggggtcagaaaagtccc-gttcaaa-cacttttgtctacagtccattatat 129
||||||||| || ||||||||| ||| ||||||| ||||||||| ||||||||||||| |
Sbjct: 8649 atggatttttggttcagaaaaggccccgttcaaaacacttttgtatacagtccattatct 8590
Query: 130 acaagtctcgcaccggaaattcctttgtttacaatatagtatgtttaattttagataaac 189
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8589 acaagtatcgcaccggaaattcctttgtttacaatatagtatgtttaattttagataaac 8530
Query: 190 gatgtagaaagagtgagattggaataaattgcatttgtggaaatatgtgtaacgtagcag 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8529 gatgtagaaagagtgagattggaataaattgcatttgtggaaatatgtgtaacgtagcag 8470
Query: 250 tgccggaatgcttaaagtgctcctagcgcggctcaacttgctttgaatggtttacgacaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8469 tgccggaatgcttaaagtgctcctagcgcggctcaacttgctttgaatggtttacgacaa 8410
Query: 310 tttacaagttatcaagagaaaggggggataaaaagaatgcatcggccgggaatcgaaccc 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8409 tttacaagttatcaagagaaaggggggataaaaagaatgcatcggccgggaatcgaaccc 8350
Query: 370 ggggcccaacgatggcaacgttggattttaccactaaaccaccgatgcttagtagttttt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8349 ggggcccaacgatggcaacgttggattttaccactaaaccaccgatgcttagtagttttt 8290
Query: 430 gatgtgttaatgtaaatttcatcaaccttaatgagctaataaatatcacatgaagcaaag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8289 gatgtgttaatgtaaatttcatcaaccttaatgagctaataaatatcacatgaagcaaag 8230
Query: 490 tttaattgaactagatatagttgaagctgaaattgttacactataaacacaagatagtca 549
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8229 tttaattgaactagatatagttgaagctgaaattgttacactataaacacaaaatagtca 8170
Query: 550 aaagtgaaggttattgagaggggattattaggatgttgctctagtcaaacattgatccac 609
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 8169 aaagtgaaggttattgagaggggattattaggatgttgttctagtcaaacattgttccac 8110
Query: 610 atagcgatttgacaagattacggcattcttacgttcatgcggttcctacatctgagaaag 669
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8109 atagcgttttgacaagattacggcattcttacgttcatgcggttcctacatctgagaaag 8050
Query: 670 aattagttcgtacatgtgtctggatgactttctctggtttaaagtctagattttgaacag 729
||||| | ||||||||| |||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 8049 aattattccgtacatgt-tctggatgac-ttctctgg-ttaaagtc-agattttgaaca- 7995
Query: 730 gaaatttttgttggctctatcggcccggtcctgcaaaatcgaatttccggtatacgcacg 789
||||||||| ||||||||||||| ||| |||||||||| |||| |||| ||||||||||
Sbjct: 7994 gaaattttt-ttggctctatcgg-ccgttcctgcaaaagcgaa-ttccagtatacgcac- 7939
Query: 790 gatctaagta 799
||||||||||
Sbjct: 7938 gatctaagta 7929
>3x_Contig1482
Length = 10060
Score = 186 bits (94), Expect = 5e-47
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 339 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7842 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 7783
Query: 399 accactaaaccaccgatgcttagtagtttttgatgtgt 436
|||||||||||||||||||||||||||| |||||||||
Sbjct: 7782 accactaaaccaccgatgcttagtagttattgatgtgt 7745
>3x_Contig1658
Length = 13395
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 339 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4253 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 4194
Query: 399 accactaaaccaccgatgcttagtagtt 426
||||||||||||||||||||||||||||
Sbjct: 4193 accactaaaccaccgatgcttagtagtt 4166
>3x_Contig1765
Length = 24733
Score = 167 bits (84), Expect = 5e-41
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 339 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16835 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 16894
Query: 399 accactaaaccaccgatgcttagtagtttttgatgt 434
||||||||||||||||||| ||||| || |||||||
Sbjct: 16895 accactaaaccaccgatgcctagtatttgttgatgt 16930
>3x_Contig340
Length = 1690
Score = 161 bits (81), Expect = 3e-39
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 339 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaagaatgcatcggccgggaatcgaacccggggcccaacgatggcaacgttggatttt 266
Query: 399 accactaaaccaccgatgctt 419
|||||||||||||||||||||
Sbjct: 265 accactaaaccaccgatgctt 245
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6484
Number of Sequences: 1807
Number of extensions: 6484
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 5
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)