BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH05FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1386 0.0
>3x_Contig1062
Length = 5564
Score = 1386 bits (699), Expect = 0.0
Identities = 759/775 (97%), Gaps = 3/775 (0%)
Strand = Plus / Plus
Query: 87 agacgtagaatcaaccttgaacttggtaccaaagatcttgaccttgtcagtatctagaga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 agacgtagaatcaaccttgaacttggtaccaaagatcttgaccttgtcagtatctagaga 4428
Query: 147 agtgttggcaatcaaaattttagcattttccacgcgctttggctggttgctaccaaatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 agtgttggcaatcaaaattttagcattttccacgcgctttggctggttgctaccaaatct 4488
Query: 207 ttttggtaagataaatccttcatctaagaaagaatcagaaagcttaccaccaatgatctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 ttttggtaagataaatccttcatctaagaaagaatcagaaagcttaccaccaatgatctt 4548
Query: 267 gataatttgaatatgttccaaattggtggaacccttcaatctgagaatggcatctgttgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 gataatttgaatatgttccaaattggtggaacccttcaatctgagaatggcatctgttgc 4608
Query: 327 caattttgagaaatgatctttatcttgagacaaaattttagatgaaagtgtcgtgtttgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4609 caattttgagaaatgatctttatcttgagacaaaattttagatgaaagtgtcgtgtttgc 4668
Query: 387 aatgctgatcaaatcgttgtagaactcttccttattattcgagttatccacagcggcctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4669 aatgctgatcaaatcgttgtagaactcttccttattattcgagttatccacagcggcctt 4728
Query: 447 ctccaatgctgatagagcagccgcagatgcaattctgaaaccttcaataatggtttgtgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4729 ctccaatgctgatagagcagccgcagatgcaattctgaaaccttcaataatggtttgtgg 4788
Query: 507 gtggatttttccttgttcgaccaatttctcagcctctctcaatagctcagcacttaaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4789 gtggatttttccttgttcgaccaatttctcagcctctctcaatagctcagcacttaaaac 4848
Query: 567 tgtaacactggtagtaccgtcaccaacttcatcatcttggactttactaatgttcacaag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 tgtaacactggtagtaccgtcaccaacttcatcatcttggactttactaatgttcacaag 4908
Query: 627 aactttagcggcgggattgtccaatggaatcgatttaagaatagtagcaccatcatttgt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 aactttagcggcgggattgtccaatggaatcgatttaagaatagtagcaccatcatttgt 4968
Query: 687 taccatgctagtgttgttagatgcactttgaagtaacttgtccataccttttgggcctag 746
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 4969 taccatgctagtgttgttagatgcactttgaagtagcttgtccataccttttggtcctag 5028
Query: 747 agtagtttttacccaattacctacagcgatggcaccgacaaaagcctttatacgagcttt 806
||||||||| ||| ||| ||||||||||||||||||||||||||| | |||||||| ||
Sbjct: 5029 agtagttttcaccaaatcacctacagcgatggcaccgacaaaagcactcatacgagcatt 5088
Query: 807 ttcaagcctttttttcggtaacttggacccccaaaaatcgggaccgctcattctt 861
||| |||| ||| ||||||||||| || ||||||||||| ||| |||||||||||
Sbjct: 5089 ttc-agccctttcttcggtaactt-gatccccaaaaatc-ggaacgctcattctt 5140
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6862
Number of Sequences: 1807
Number of extensions: 6862
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)