BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH05RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 1548 0.0
>3x_Contig858
Length = 3029
Score = 1548 bits (781), Expect = 0.0
Identities = 834/849 (98%), Gaps = 2/849 (0%)
Strand = Plus / Plus
Query: 47 tgatgttgaatccatcacttaaaatagtttgtacttcctccaattctagaccagatagtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 tgatgttgaatccatcacttaaaatagtttgtacttcctccaattctagaccagatagtt 1408
Query: 107 ctggataacagagataacagaagacggtagatactgcagctagtgcagcaaataatgaaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ctggataacagagataacagaagacggtagatactgcagctagtgcagcaaataatgaaa 1468
Query: 167 atgtaccagtcggtgttatgttttgtaacattgttaggaaggtagatgctttatttaggg 226
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1469 atgtaccagtcggtgttatgttttgtaacattgttaggaaggtagatgcaataattaggg 1528
Query: 227 aaccagcccagttagtagctgtacaataagaagtacctacacctctaacggatgttgcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 aaccagcccagttagtagctgtacaataagaagtacctacacctctaacggatgttgcaa 1588
Query: 287 ataattcagattgctgccatggtacagtaccgatacctagagcatagaatgctgcatata 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 ataattcagattgctgccatggtacagtaccgatacctagagcatagaatgctgcatata 1648
Query: 347 ccatgatgaatacgataacgactataccccaagaactgaatccaccattggaaacttccg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 ccatgatgaatacgataacgactataccccaagaactgaatccaccattggaaacttccg 1708
Query: 407 attcaccagcgccagtgaattttatatctaggaaatggaaggcgatagcacacataacca 466
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1709 attcaccagcgccagtgaatttcatatctaggaaatggaaggcgatagcacacataacca 1768
Query: 467 aggaaaccatcataccaggcaagccaatcaaaaggattgctctacgaccgaccttatcaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 aggaaaccatcataccaggcaagccaatcaaaaggattgctctacgaccgaccttatcaa 1828
Query: 527 tcgcaaagaaagcgactaaagtgaatacgaagttagtaccggcaacgatgatagacactg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 tcgcaaagaaagcgactaaagtgaatacgaagttagtaccggcaacgatgatagacactg 1888
Query: 587 cagtagaattttcgaaaccaacagtttgaaaaatagtaccagagaaatacattaaagaat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 cagtagaattttcgaaaccaacagtttgaaaaatagtaccagagaaatacattaaagaat 1948
Query: 647 tccaaccacagaattgttgaataccttgtaaagcacaaccgatcaccaatgccctgaaat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 tccaaccacagaattgttgaataccttgtaaagcacaaccgatcaccaatgccctgaaat 2008
Query: 707 tgcatgggacagtatgtaattttttgacagtgttgaagaacttgtgtacaggggtcttac 766
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 tgcatgggacagtatgtaattctttgacagtgttgaagaacttgtgtacaggggtcttac 2068
Query: 767 ctgggatagccttattcaaatctgataggtcacggattttttgatcgat-agatccttgg 825
|||||||||||| ||||||||||||||| |||||||||||||||||||| || |||| ||
Sbjct: 2069 ctgggatagcctcattcaaatctgatagttcacggattttttgatcgataagttcctggg 2128
Query: 826 gagcgcttatgtaacttttttgtaaaacttctgcagccttcttatagttacctttt-tca 884
||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2129 gagcgttaatgtaactcttttgtaaaacttctgcagccttcttatagttaccttttatca 2188
Query: 885 cgttgaaac 893
||| |||||
Sbjct: 2189 cgtagaaac 2197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6144
Number of Sequences: 1807
Number of extensions: 6144
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)