BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH07RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1505 0.0
>3x_Contig1758
Length = 25930
Score = 1505 bits (759), Expect = 0.0
Identities = 844/867 (97%), Gaps = 4/867 (0%)
Strand = Plus / Minus
Query: 47 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 11906
Query: 107 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11905 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 11846
Query: 167 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11845 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 11786
Query: 227 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11785 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 11726
Query: 287 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11725 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 11666
Query: 347 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11665 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 11606
Query: 407 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11605 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 11546
Query: 467 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11545 agtgggatctaatgagaattcctctagaaatatctctagctcttgtctgaaattttccac 11486
Query: 527 agttggcacttcacggctccaaaatttcaacctctccccggttattggatccaagatggc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11485 agttggcacttcacggctccaaaatttcaacctctccccggttattggatccaagatggc 11426
Query: 587 gatatgaggacaatcttccttatcgttgaacccataacgttgtacataggcagatgctag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11425 gatatgaggacaatcttccttatcgttgaacccataacgttgtacataggcagatgctag 11366
Query: 647 tcttgattcatattgatattgcagaaatatgaaatttttgttttatgaaggattttatac 706
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11365 tcttgattcatattgatattgcagaaatatgaaa-ttttgttttatgaaggattttatac 11307
Query: 707 ctgcattggaccaaagatctctgttaagcatctggcacttggaaatatctgcacattgga 766
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 11306 ctgcattggaccaaagatctctgttaagcatctggcactggaaaatatctgcacattgga 11247
Query: 767 ttgtaatcaatacccatttattcctttttcttggctttttgcctttcagtgtcaaaaccg 826
| |||||| |||||||||||||| |||||||||||||||||||| ||||||||| | ||
Sbjct: 11246 tgttaatcattacccatttattcc-ttttcttggctttttgccttgcagtgtcaagatcg 11188
Query: 827 aattttgcccttaaaacgaatggaggtttaaac-attatgcctaccgggtttcctttgac 885
|||||||| ||||| ||||||||||| ||||| || |||| || |||||||||||||
Sbjct: 11187 tattttgccattaaatcgaatggaggtctaaacaataatgctagcctggtttcctttgac 11128
Query: 886 aatggttttggactttttaacccattt 912
| ||||||||| ||| |||||||||||
Sbjct: 11127 attggttttgg-cttcttaacccattt 11102
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6296
Number of Sequences: 1807
Number of extensions: 6296
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)