BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC49ZH08RM1.SCF screened BAC_end
         (939 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1781                                                        1096   0.0  

>3x_Contig1781 
          Length = 20717

 Score = 1096 bits (553), Expect = 0.0
 Identities = 651/681 (95%), Gaps = 2/681 (0%)
 Strand = Plus / Minus

                                                                         
Query: 48    caaggatcgccatcggagaaggcgaggggcaattaagtgcctgggcagagaggcattctc 107
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18656 caaggatcgcc-tcggagaaggcgaggggcaattaagtgcctgggcagagaggcattctc 18598

                                                                         
Query: 108   tcttttttttttttttgttttggtgtttaagtgggtgtttcttttggcctcgagacgata 167
             |||||||||||||||| |||||||||||  |||| |||||||||||||||||||||||||
Sbjct: 18597 tctttttttttttttttttttggtgtttttgtggttgtttcttttggcctcgagacgata 18538

                                                                         
Query: 168   cacagaaacatgcgcaggatcgggaatatcatgcaatgtggaaagcgaagattgtggctc 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18537 cacagaaacatgcgcaggatcgggaatatcatgcaatgtggaaagcgaagattgtggctc 18478

                                                                         
Query: 228   gaacgagaacatcgtgcatgcagagcgcctttttctagggtagaaggatatagggaagcg 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18477 gaacgagaacatcgtgcatgcagagcgcctttttctagggtagaaggatatagggaagcg 18418

                                                                         
Query: 288   gactttagccaaggagctgacggagtcttatttgagaaaggtacagtattaacaggtaat 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18417 gactttagccaaggagctgacggagtcttatttgagaaaggtacagtattaacaggtaat 18358

                                                                         
Query: 348   aagaagcaggaaataggtttgtggttcgtgattcatggttcatcgttgacaatcgcatgt 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18357 aagaagcaggaaataggtttgtggttcgtgattcatggttcatcgttgacaatcgcatgt 18298

                                                                         
Query: 408   gactaaactgattataactcagaggcacatccatagccgccaccgcctggagtctggatc 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18297 gactaaactgattataactcagaggcacatccatagccgccaccgcctggagtctggatc 18238

                                                                         
Query: 468   acgatcttatctccaggacgcatcataacggtgttcttacctcccaagttcacaatggaa 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18237 acgatcttatctccaggacgcatcataacggtgttcttacctcccaagttcacaatggaa 18178

                                                                         
Query: 528   ccttcggtgtcttcactttctcctcctcttattcacaggttcattcctcttttttcatta 587
             |||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| |
Sbjct: 18177 ccttcggtgtcttcacttcctcctcctcttatccacaggttcattcctctttctccatca 18118

                                                                         
Query: 588   ccaccaccttggagtccattatgctgatgaactctttttctttaaaggattgaagcttgc 647
             ||||||||||||||||||||| || ||||||||||| |   | |||||||||||||||||
Sbjct: 18117 ccaccaccttggagtccattaggcggatgaactcttctctctgaaaggattgaagcttgc 18058

                                                                         
Query: 648   acttggtctgtaaattccactt-ttgaatgacaccatttcctttatggaaattggcccca 706
             ||||| |||||||||||||||| | ||||||||||||| |||  | |||| ||| || ||
Sbjct: 18057 acttgttctgtaaattccacttctcgaatgacaccattccctccacggaatttgcccaca 17998

                                  
Query: 707   cttccagacgccttttttatt 727
             |  |||||||||||| |||||
Sbjct: 17997 ccgccagacgcctttcttatt 17977


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,766
Number of Sequences: 1807
Number of extensions: 14766
Number of successful extensions: 1712
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)