BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH09FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1308 0.0
>3x_Contig1650
Length = 11257
Score = 1308 bits (660), Expect = 0.0
Identities = 741/760 (97%), Gaps = 6/760 (0%)
Strand = Plus / Minus
Query: 88 cacagtttgttgcatcattgcagaaacggtacccatccgccacttattacaaagtgttag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 cacagtttgttgcatcattgcagaaacggtacccatccgccacttattacaaagtgttag 1702
Query: 148 agcaatatgtcaagtacaggcaatctcctgcgaaatatagttttgaaaatgggttaaagt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 agcaatatgtcaagtacaggcaatctcctgcgaaatatagttttgaaaatgggttaaagt 1642
Query: 208 tgatcttggatgccaaatctcctccaagcgatgcgaaatcgctatcaatgtgccatcgat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 tgatcttggatgccaaatctcctccaagcgatgcgaaatcgctatcaatgtgccatcgat 1582
Query: 268 ttttgttggaattaggttttgacaccaccagtgcattggaaccttatgaaagagcaatga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 ttttgttggaattaggttttgacaccaccagtgcattggaaccttatgaaagagcaatga 1522
Query: 328 tgaaatacggtaattcggagacatgttatgattggttcttggagtcattgagggatttaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 tgaaatacggtaattcggagacatgttatgattggttcttggagtcattgagggatttaa 1462
Query: 388 attggagacatttgagtaagagtagtttccagatgccacgagtcaatgaaaaatcgaaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 attggagacatttgagtaagagtagtttccagatgccacgagtcaatgaaaaatcgaaat 1402
Query: 448 cgagattgttccaattctggaacagtattgctactgtagtatggtttcagttggataaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 cgagattgttccaattctggaacagtattgctactgtagtatggtttcagttggataaag 1342
Query: 508 ataacattaacgaaagggaattggatcttttacctaagttgacatataaattgacaagcg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 ataacattaacgaaagggaattggatcttttacctaagttgacatataaattgacaagcg 1282
Query: 568 atttgaaaccttttgagaatgagcaagagttgatcgttttctgtaaagtttgtgaattgt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 atttgaaaccttttgagaatgagcaagagttgatcgttttctgtaaagtttgtgaattgt 1222
Query: 628 ttgaggat-aatcacaggagatcgtggacgagatcctcaagttttgg-aacatgggtctt 685
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 1221 ttgaggataaatcacaggagatcgtggacgagatcctcaagttttggaaacatggtactt 1162
Query: 686 acttagacctttatttg-aaaactttcttatgggccatttggtgaaattagacgattttt 744
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 1161 acttagacctttatttgaaaaacttccttatgggccatttggtgaaattagacgattata 1102
Query: 745 aacttatttggaaacatggaatctcgtt-ttgaaataccttgacgattatggttttttgc 803
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 1101 aactcatttggaaacatggaatctcgttattgaataaccttgacgattatggtattttgc 1042
Query: 804 -aaagaatatttatgccagttacaaa-ttggcaagtcatt 841
||||| ||| |||| ||||||||| |||||||||||||
Sbjct: 1041 aaaagattatagatgcaagttacaaacttggcaagtcatt 1002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7449
Number of Sequences: 1807
Number of extensions: 7449
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)