BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH11FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1179 0.0
>3x_Contig1804
Length = 51183
Score = 1179 bits (595), Expect = 0.0
Identities = 694/719 (96%), Gaps = 6/719 (0%)
Strand = Plus / Minus
Query: 87 caagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgctgga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26275 caagtaatcaagatggttttctttatcaaccacattcttgtatggtgtctttttgctgga 26216
Query: 147 ttcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgacttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26215 ttcttccgaggtatctacttcattcacatcttcagaatgagctttttccatcacgacttc 26156
Query: 207 aagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctctgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26155 aagttcctttttctccaagctcaactttggtaagaaagttgagttaccaaccagctctgc 26096
Query: 267 ctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttgacca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26095 ctcttctatagactttccaacgtagatattgtcgaatgatatatcgcttgcacttgacca 26036
Query: 327 aatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcataata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26035 aatatcaaaggaaattgcagtaatagcatcaatgttcgctggtgttttatcctcataata 25976
Query: 387 attgggattcgctatgagaggcgccttccattcaccttgataattggggttagggatcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25975 attgggattcgctatgagaggcgccttccattcaccttgataattggggttagggatcat 25916
Query: 447 ttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccacttttc 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 25915 ttcagccttccaagtacctctgtatttttcattttcaaccatctttggtctccactttcc 25856
Query: 507 acaacctttgtttcgtatagcacgaaggattaacaataaggggagcaattcatctttcat 566
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 25855 acaacc-ttgtttcgtatagcacgaaggattaacaataaggggagcaatccatcttccat 25797
Query: 567 ccaccttgtcattccaccaatctggtttagaacgcgattcattctcga-gtatttcgaga 625
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct: 25796 ccaccttgtcattccaccaatctggtttagaacgcgattcatcctcgatgtattcagaga 25737
Query: 626 tgctgtcattccattcctttggttttttgaacattggatctggaatccacttgggttcat 685
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 25736 tgctgtcatcccattcctctggttttttgaacattggatctggaatccacttgggttcat 25677
Query: 686 tttcatcccagtctttccgttttatgggcagtgggatcagggatcataaaactggttgcc 745
||||||||||||||| | ||||||| |||||||||||||||||||||| | || | ||||
Sbjct: 25676 tttcatcccagtcttccggttttat-ggcagtgggatcagggatcatagacct-gctgcc 25619
Query: 746 ccaatcccctgggttgactagcaaaaggattctttattttcctttggaggatttaggct 804
||||||| || || ||||||||| ||||| |||| | ||||| ||||||||||||||||
Sbjct: 25618 ccaatccgct-ggctgactagcagaagga-tcttcaatttcccttggaggatttaggct 25562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7751
Number of Sequences: 1807
Number of extensions: 7751
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)