BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH11RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1764 1223 0.0
>3x_Contig1764
Length = 22510
Score = 1223 bits (617), Expect = 0.0
Identities = 646/653 (98%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 47 aactgatgtagatacgagacttatttttttctgttgtccactgcttgcctttttcattct 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3428 aactgatgtagatacgagacttatttttttctgttgtccactgcttgcctttttcattct 3369
Query: 107 tgtatttcaagtacatattaaaacttatcggctggaaaagattaaaatgtttcatctgga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3368 tgtatttcaagtacatattaaaacttatcggctggaaaagattaaaatgtttcatctgga 3309
Query: 167 gtgtcctcataacaaaatgacccccatgacttctaaattatattagcatcttaaacagaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3308 gtgtcctcataacaaaatgacccccatgacttctaaattatattagcatcttaaacagaa 3249
Query: 227 actgaattgattatatgtaggtttatgtttggatattcttatataatcttttaaagaaag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3248 actgaattgattatatgtaggtttatgtttggatattcttatataatcttttaaagaaag 3189
Query: 287 cacgttataataccatcgtatacttgattgcaataagattaagactccaatatcatagta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3188 cacgttataataccatcgtatacttgattgcaataagattaagactccaatatcatagta 3129
Query: 347 ggaactgaagattggtatcgatttcatgcgaacaagataattggggcttttgagtgtatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 ggaactgaagattggtatcgatttcatgcgaacaagataattggggcttttgagtgtatt 3069
Query: 407 tgctacttaactcggctctcatattttgcaataagcttaagtaggactgttgaggttgtt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 tgctacttaactcggctctcatattttgcaataagcttaagtaggactgttgaggttgtt 3009
Query: 467 ttgatagtactgttaagaaagcccaggacattgcaccagtgttttgaccattttcagtag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 ttgatagtactgttaagaaagcccaggacattgcaccagtgttttgaccattttcagtag 2949
Query: 527 catcagccgacgtttgattatctttttgaccactaaacatgatgacatcagctggcgaga 586
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2948 catcagccgacgtttgattatcttttgaaccactaaacatgatgacatcagctggcgaga 2889
Query: 587 attttatttgcttaactctttctttgtcgacgttattattggacttggtgatggtggtga 646
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2888 attttatttgcttaactctttctctgtcgacgttattattggacttggtgatggtggtga 2829
Query: 647 atacattttccttaagaactgaccaaaactggttggattaccagtagcgtatg 699
||||| |||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct: 2828 ataca-tttcctaaagaactgacc-aaactggttgtattaccagtagcgtatg 2778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7324
Number of Sequences: 1807
Number of extensions: 7324
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)