BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC49ZH12FM1.SCF screened BAC_end
(964 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1144 0.0
3x_Contig1585 412 e-115
>3x_Contig1475
Length = 10676
Score = 1144 bits (577), Expect = 0.0
Identities = 637/653 (97%), Gaps = 3/653 (0%)
Strand = Plus / Minus
Query: 84 tatacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccattgt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8508 tatacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccattgt 8449
Query: 144 cacctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtcttg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8448 cacctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtcttg 8389
Query: 204 gtttagagaatgtctttgttgacgttatggaaaagccaccaaaggatgccaaggctgttg 263
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8388 gtttagagaaggccagtgttgacgttatggaaaagccaccaaaggatgccaaggctgttg 8329
Query: 264 ttttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcatgtt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8328 ttttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcatgtt 8269
Query: 324 gtatggcatgtttcgttaccgtgctctatggtaccggtgatggtaacttgggttctgact 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8268 gtatggcatgtttcgttaccgtgctctatggtaccggtgatggtaacttgggttctgact 8209
Query: 384 gtaacgatgcacttggtgaaacgtgtcacttggttttcagaggccgtgctgcagcatttg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8208 gtaacgatgcacttggtgaaacgtgtcacttggttttcagaggccgtgctgcagcatttg 8149
Query: 444 caacaatgacttggtgtgcattgattttagcctgggaagttgtcgacatgagaagatcat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8148 caacaatgacttggtgtgcattgattttagcctgggaagttgtcgacatgagaagatcat 8089
Query: 504 tcttcatgatgaaccctgaaagtgaaacaccatacactcaagtgttcaaggacatctgga 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8088 tcttcatgatgaaccctgaaagtgaaacaccatacactcaagtgttcaaggacatctgga 8029
Query: 564 gcaatcaattcttgttttggtccattgttggtgggtttctgttccgtgttcccaggggtt 623
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 8028 gcaatcaattcttgttttggtccattgttggtggg-ttctgttccgtgttcccagtggtt 7970
Query: 624 tatattccagtaatcaacgacaaagtgttctttactttcaatatcagttacgaatgggga 683
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 7969 tatatcccagtaatcaacgacaaagtgttcttacattacaatatcagttacgaatgggga 7910
Query: 684 tttgcaatcggatttagtttcgcattcttgggcagccgtt-aattattcaaat 735
|| |||||||||||||||||||||||| ||||||| |||| |||||| |||||
Sbjct: 7909 ttcgcaatcggatttagtttcgcattc-tgggcaggcgttgaattatacaaat 7858
>3x_Contig1585
Length = 11490
Score = 412 bits (208), Expect = e-115
Identities = 503/600 (83%), Gaps = 1/600 (0%)
Strand = Plus / Plus
Query: 86 tacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccattgtca 145
||||||||||||||||||||||| ||||| | ||||| ||||| || |||||||| ||
Sbjct: 303 tacttgatggttggtttatgttttcttgatgaggaagggttctcagtattcccattatct 362
Query: 146 cctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtcttggt 205
|||||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 363 cctgtcgaggttttgtgggttattgttgttacctcatgttttccagcaatgggtctcggt 422
Query: 206 ttagagaatgtctttgttgacgttatggaaaagccaccaaaggatgccaaggctgttgtt 265
|| ||||| | ||||||||| ||||| |||||||||||||||||||| |||||| |
Sbjct: 423 ttggagaaggctaatgttgacgtgatggagaagccaccaaaggatgccaaagctgttata 482
Query: 266 ttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcatgttgt 325
||||| ||||||||||| | ||||||||||| || ||||| || || |||||||||||
Sbjct: 483 ttcacgtgggaagtcatcgtcgatatgcttgtctatggtgtaattattgcagcatgttgc 542
Query: 326 atggcatgtttcgttaccgtgctctatggtaccggtgatggtaacttgggttctgactgt 385
||||||||||| || || || |||||||||| ||||||||||| ||||| | |||
Sbjct: 543 atggcatgttttgtcacggtaatctatggtactggtgatggtaatttgggccgcgggtgt 602
Query: 386 aacgatgcacttggtgaaacgtgtcacttggttttcagaggccgtgctgcagcatttgca 445
||| ||| ||| ||| |||||| |||||| |||| ||||||||||||||||| |||
Sbjct: 603 aacaatggctttgatgattcgtgtcgcttggtcttcaagggccgtgctgcagcattcgca 662
Query: 446 acaatgacttggtgtgcattgattttagcctgggaagttgtcgacatgagaagatcattc 505
|| ||||| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 663 actatgacgtggtgtgcattaattttagcttgggaggttgttgacatgagaagatcattc 722
Query: 506 ttcatgatgaaccctgaaagtgaaacaccatacactcaagtgttcaaggacatctggagc 565
||||||||||| ||||||| ||| |||||||| || ||||||||||| || ||||||||
Sbjct: 723 ttcatgatgaatcctgaaactgagacaccatatacgcaagtgttcaaagatgtctggagc 782
Query: 566 aatcaattcttgttttggtccattgttggtgggtttctgttccgtgttcccaggggttta 625
|||||||| || || ||||| ||||||||||| ||| ||||| |||||||| | ||||||
Sbjct: 783 aatcaatttttattctggtcaattgttggtggcttt-tgttctgtgttcccggtggttta 841
Query: 626 tattccagtaatcaacgacaaagtgttctttactttcaatatcagttacgaatggggatt 685
|| ||||| || ||||||||||| ||||| || | |||||| ||| |||||||||||
Sbjct: 842 catcccagtgattaacgacaaagtattcttacattacgatatcacttatgaatggggatt 901
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8578
Number of Sequences: 1807
Number of extensions: 8578
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 2
length of query: 964
length of database: 10,358,551
effective HSP length: 16
effective length of query: 948
effective length of database: 10,329,639
effective search space: 9792497772
effective search space used: 9792497772
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)